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Part 1: Document Description
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Citation |
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Title: |
Salmon keratocyte DIC microscopy videos |
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Identification Number: |
doi:10.18710/Q57B06 |
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Distributor: |
DataverseNO |
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Date of Distribution: |
2021-11-26 |
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Version: |
1 |
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Bibliographic Citation: |
Opstad, Ida S.; Wolfson, Deanna L., 2021, "Salmon keratocyte DIC microscopy videos", https://doi.org/10.18710/Q57B06, DataverseNO, V1 |
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Citation |
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Title: |
Salmon keratocyte DIC microscopy videos |
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Subtitle: |
Dynamics of primary cells from Atlantic salmon scales acquired using differential interference contrast microscopy at room temperature |
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Identification Number: |
doi:10.18710/Q57B06 |
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Authoring Entity: |
Opstad, Ida S. (UiT The Arctic University of Norway) |
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Wolfson, Deanna L. (UiT The Arctic University of Norway) |
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Other identifications and acknowledgements: |
Wolfson, Deanna |
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Other identifications and acknowledgements: |
Dalmo, Roy Ambli |
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Other identifications and acknowledgements: |
Seternes, Tore |
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Other identifications and acknowledgements: |
Agarwal, Krishna |
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Other identifications and acknowledgements: |
Ahluwalia, Balpreet |
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Producer: |
UiT The Arctic University of Norway |
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Grant Number: |
Tematiske satsinger (Virtual Stain; 2061348) |
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Grant Number: |
301401 |
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Grant Number: |
Video microscopy of salmon cells, disease progression and defence mechanisms |
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Distributor: |
DataverseNO |
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Distributor: |
UiT The Arctic University of Norway |
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Access Authority: |
Opstad, Ida S. |
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Depositor: |
Opstad, Ida Sundvor |
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Date of Deposit: |
2021-10-20 |
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Series Name: |
Video microscopy of salmon cells |
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Series Information: |
This is the first dataset in a planned series of microscopy time-lapse data of fish cells. |
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Holdings Information: |
https://doi.org/10.18710/Q57B06 |
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Study Scope |
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Keywords: |
Medicine, Health and Life Sciences, Salmon, keratocyte, scale, live-cell, label-free, room temperature, differential interference contrast, DIC |
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Abstract: |
Series of differential interference contrast microscopy (DIC) videos of primary keratocytes from Atlantic salmon scales acquired at room temperature (RT). The salmon from Kårvika (Tromsø Aquaculture Research Station) was about 1 kg +- 0.4 kg of either sex or smolt (about 10 to 15 cm long). The triploid salmon was > 1 kg and from a fish farm at Senja. The fish and cells were untreated. Unless specifically mentioned, the videos were acquired as single panels (field-of-view (FOV) 668 µm^2) 5 seconds apart for up to 20 hours, or larger areas (multiple panels (typically 4 by 4) of a combined FOV 2.7 mm^2) 2 minutes apart for up to 24 hours. The aim of the study was to investigate salmon skin cell dynamics, which are important to the innate immunity of fish. |
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Date of Collection: |
2020-08-05-2021-05-06 |
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Country: |
Norway |
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Geographic Coverage: |
Troms, Tromsø, Kårvika |
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Geographic Unit(s): |
village |
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Kind of Data: |
Experimental |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Other Study Description Materials |
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Label: |
000_readme.txt |
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text/plain |
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001_data_file_notes.csv |
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text/comma-separated-values |
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001_data_file_notes.PNG |
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image/png |
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20200805_SalmKera_0day_DIC_2mTL_10x_02_R3D.dv.log |
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text/plain |
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20200806_SalmKera_1day_DIC_2mTL_10x_01_R3D.dv.log |
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20200806_SalmKera_2day_DIC_2mTL_10x_01_R3D.dv.log |
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20210506_SalmKera_day2-inf_DIC_500msTL_20X_01_R3D.dv.log |
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20200805_SalmKera_0day_DIC_2mTL_10x_02_R3D.avi |
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video/x-msvideo |
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20200806_SalmKera_1day_DIC_2mTL_10x_01_R3D_STC.avi |
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video/x-msvideo |
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20200911_SalmKera_day4_DIC_10X_2mTL_01_R3D_STC-1.avi |
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20200912_day5_DIC_10X_2mTL_01_R3D_STC-1.avi |
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20201005_SalmKera_day0_DIC_10x_2mTL_02_R3D_STC-1.avi |
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20201009_SalmKera_day4_DIC_10X_2mTL_01_R3D_STC-1.avi |
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20210323_TriploidKera_day1_DIC_10X_2mTL_01_R3D_STC-1.avi |
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20210325_TriploidKera_day3_DIC_10X_2mTL_01_R3D_STC.avi |
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20210415_SalmKera_2day_DIC_2minTL_10x_002_R3D_STC-1.avi |
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video/x-msvideo |
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20210416_SalmKera_3day_DIC_2minTL_fused_004-8bit-1.avi |
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video/x-msvideo |
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20210504_SalmKera_day0_2minTL_001_R3D_STC-1.avi |
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20210506_SalmKera_day2-inf_DIC_500msTL_20X_01_R3D.avi |
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20200806_SalmKera_1day_DIC_2mTL_10x_01_R3D.dv |
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20200806_SalmKera_2day_DIC_2mTL_10x_01_R3D.dv |
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