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Part 1: Document Description
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Citation |
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Title: |
Replication data for: Primitive duplicate Hox clusters in the European eel's genome |
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Identification Number: |
doi:10.18710/L7GO8T |
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Distributor: |
DataverseNO |
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Date of Distribution: |
2020-03-25 |
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Version: |
1 |
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Bibliographic Citation: |
Henkel, Christiaan, 2020, "Replication data for: Primitive duplicate Hox clusters in the European eel's genome", https://doi.org/10.18710/L7GO8T, DataverseNO, V1 |
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Citation |
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Title: |
Replication data for: Primitive duplicate Hox clusters in the European eel's genome |
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Identification Number: |
doi:10.18710/L7GO8T |
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Authoring Entity: |
Henkel, Christiaan (Norwegian University of Life Sciences (NMBU)) |
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Producer: |
Norwegian University of Life Sciences (NMBU) |
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Software used in Production: |
CLC bio Genomics Workbench |
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Software used in Production: |
SSPACE |
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Software used in Production: |
AUGUSTUS |
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Software used in Production: |
Blast2GO |
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Distributor: |
DataverseNO |
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Distributor: |
Norwegian University of Life Sciences (NMBU) |
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Access Authority: |
Henkel, Christiaan |
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Depositor: |
Henkel, Christiaan |
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Date of Deposit: |
2020-03-09 |
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Holdings Information: |
https://doi.org/10.18710/L7GO8T |
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Study Scope |
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Keywords: |
Agricultural Sciences, Medicine, Health and Life Sciences, genome, European eel, genome assembly |
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Abstract: |
This is the genome assembly and annotation of Anguilla anguilla, as described in PLoS ONE 7, e32231 (2012). Previously, these data were available at www.eelgenome.com. See the readme file for more information. |
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Kind of Data: |
experimental data |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Other Study Description Materials |
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Related Materials |
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The genome assembly (but not the annotations) are also available as part of NCBI BioProject PRJNA73577. |
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Related Publications |
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Citation |
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Title: |
Christiaan V. Henkel, Erik Burgerhout, Daniëlle L. de Wijze, Ron P. Dirks, Yuki Minegishi, Hans J. Jansen, Herman P. Spaink, Sylvie Dufour, Finn-Arne Weltzien, Katsumi Tsukamoto, Guido E. E. J. M. van den Thillart. Primitive Duplicate Hox Clusters in the European Eel's Genome. PLoS ONE 7, e32231 (2012) |
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Identification Number: |
10.1371/journal.pone.0032231 |
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Bibliographic Citation: |
Christiaan V. Henkel, Erik Burgerhout, Daniëlle L. de Wijze, Ron P. Dirks, Yuki Minegishi, Hans J. Jansen, Herman P. Spaink, Sylvie Dufour, Finn-Arne Weltzien, Katsumi Tsukamoto, Guido E. E. J. M. van den Thillart. Primitive Duplicate Hox Clusters in the European Eel's Genome. PLoS ONE 7, e32231 (2012) |
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Label: |
00_readme.txt |
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Text: |
Description of the data |
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Notes: |
text/plain |
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Label: |
01_Anguilla_anguilla_scaffolds_genomic_fasta.txt |
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Text: |
Genomic scaffolds, FASTA format |
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Notes: |
text/plain |
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Label: |
02_Anguilla_anguilla_scaffolds_gene_prediction_gff.txt |
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Text: |
Predicted gene structures for genomic scaffolds, GFF format |
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Notes: |
text/plain |
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Label: |
03_Anguilla_anguilla_scaffolds_predicted_cds_fasta.txt |
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Text: |
Predicted coding sequences for genomic scaffolds, FASTA format |
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Notes: |
text/plain |
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Label: |
04_Anguilla_anguilla_unscaffolded_contigs_genomic_fasta.txt |
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Text: |
Genomic contigs, FASTA format |
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Notes: |
text/plain |
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Label: |
05_Anguilla_anguilla_unscaffolded_contigs_gene_prediction_gff.txt |
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Text: |
Predicted gene structures for genomic contigs, GFF format |
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Notes: |
text/plain |
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Label: |
06_Anguilla_anguilla_unscaffolded_contigs_predicted_cds_fasta.txt |
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Text: |
Predicted coding sequences for genomic contigs, FASTA format |
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Notes: |
text/plain |
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Label: |
07_Anguilla_anguilla_predicted_cds_additional_annotations.txt |
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Text: |
Tabular annotation data per predicted gene |
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Notes: |
text/plain |