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Part 1: Document Description
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Citation |
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Title: |
Replication data for: Detecting phylogenetically destabilizing species in Potentilla L. (Rosaceae) using low-copy nuclear markers |
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Identification Number: |
doi:10.18710/XRQEKH |
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Distributor: |
DataverseNO |
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Date of Distribution: |
2020-03-17 |
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Version: |
1 |
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Bibliographic Citation: |
Persson, Nannie L.; Toresen, Ingrid; Andersen, Heidi Lie; Smedmark, Jenny E. E.; Eriksson, Torsten, 2020, "Replication data for: Detecting phylogenetically destabilizing species in Potentilla L. (Rosaceae) using low-copy nuclear markers", https://doi.org/10.18710/XRQEKH, DataverseNO, V1 |
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Citation |
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Title: |
Replication data for: Detecting phylogenetically destabilizing species in Potentilla L. (Rosaceae) using low-copy nuclear markers |
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Identification Number: |
doi:10.18710/XRQEKH |
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Authoring Entity: |
Persson, Nannie L. (University of Bergen) |
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Toresen, Ingrid (University of Bergen) |
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Andersen, Heidi Lie (University of Bergen) |
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Smedmark, Jenny E. E. (University of Bergen) |
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Eriksson, Torsten (University of Bergen) |
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Producer: |
University of Bergen |
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Software used in Production: |
AliView |
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Distributor: |
DataverseNO |
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Distributor: |
University of Bergen |
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Access Authority: |
Eriksson, Torsten |
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Depositor: |
Persson, Nannie |
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Date of Deposit: |
2020-03-15 |
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Holdings Information: |
https://doi.org/10.18710/XRQEKH |
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Study Scope |
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Keywords: |
Medicine, Health and Life Sciences, sequence alignment, DNA markers, genetic markers, Potentilla, mureslekta, cinquefoil, phylogenetic analysis, Multispecies Coalescent model |
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Abstract: |
The dataset consists of sequence alignments for the six DNA markers DHAR2, GAPCP1, GBSSI-2, SbeI, ITS and matK in fasta format for a selected number of cinquefoil species (genus Potentilla, family Rosaceae). The alignments were used in Bayesian Inference analyses and a Multispecies Coalescent analysis, with the aim of resolving the backbone phylogeny of Potentilla |
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Resolving the evolutionary history of the plant genus Potentilla (Rosaceae) has proven challenging. Previous analyses recovered six subgroups, but the relationships among some of these clades differ between data sets. We studied the incongruences by analyzing four low-copy nuclear markers, in addition to chloroplast and nuclear ribosomal data, with a set of Bayesian phylogenetic analyses. A selective taxon removal strategy demonstrated that the included representatives from the Fragarioides clade, P. dickinsii and P. fragarioides, were the main sources of the instability seen in the trees. When P. dickinsii and P. fragarioides were removed from the dataset, a fully resolved, supported backbone phylogeny of Potentilla was obtained in a Multispecies Coalescent analysis. |
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Kind of Data: |
DNA sequence data in text format |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Other Study Description Materials |
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Related Publications |
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Citation |
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Title: |
Persson NL, Toresen I, Andersen HL, Smedmark JEE, Eriksson T. 2020. Detecting phylogenetically destabilizing species in Potentilla L. (Rosaceae) using low-copy nuclear markers. Annals of Botany Plants, in press |
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Bibliographic Citation: |
Persson NL, Toresen I, Andersen HL, Smedmark JEE, Eriksson T. 2020. Detecting phylogenetically destabilizing species in Potentilla L. (Rosaceae) using low-copy nuclear markers. Annals of Botany Plants, in press |
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Label: |
00_README.txt |
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Text: |
Description of the dataset. |
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Notes: |
text/plain |
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Label: |
align_DHAR2_Backbone.fasta |
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Text: |
Alignment for the DHAR2 gene. |
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Notes: |
application/octet-stream |
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Label: |
align_GAPCP1_Backbone.fasta |
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Text: |
Alignment for the GAPCP1 gene. |
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Notes: |
application/octet-stream |
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Label: |
align_GBSSI2_Backbone.fasta |
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Text: |
Alignment for the GBSSI-2 gene. |
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Notes: |
application/octet-stream |
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Label: |
align_ITS_Backbone.fasta |
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Text: |
Alignment for the ITS gene. |
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Notes: |
application/octet-stream |
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Label: |
align_matK_Backbone.fasta |
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Text: |
Alignment for the matK gene. |
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Notes: |
application/octet-stream |
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Label: |
align_SbeI_Backbone.fasta |
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Text: |
Alignment for the SbeI gene. |
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Notes: |
application/octet-stream |