{"id":116108,"identifier":"Z37SBD","persistentUrl":"https://doi.org/10.18710/Z37SBD","protocol":"doi","authority":"10.18710","separator":"/","publisher":"DataverseNO","publicationDate":"2022-01-05","storageIdentifier":"S3://10.18710/Z37SBD","datasetType":"dataset","datasetVersion":{"id":3956,"datasetId":116108,"datasetPersistentId":"doi:10.18710/Z37SBD","storageIdentifier":"S3://10.18710/Z37SBD","versionNumber":1,"versionMinorNumber":1,"versionState":"RELEASED","latestVersionPublishingState":"RELEASED","deaccessionLink":"","productionDate":"2022-05-01","lastUpdateTime":"2023-09-28T22:57:40Z","releaseTime":"2023-09-28T22:57:40Z","createTime":"2023-09-28T16:22:53Z","publicationDate":"2022-01-05","citationDate":"2022-01-05","termsOfUse":"<p>The following files and folders in this dataset may be reused as described in the CC0 public domain dedication: <a>https://creativecommons.org/publicdomain/zero/1.0/ : </a>\n<ul>\n<li> 00_README.txt</li>\n<li> dipole_simulator.m</li>\n<li> .dipole folder, including: </li>\n<ul>\n<li> 02_README.txt</li>\n<li> polarisator_in_back_aperature.m</li>\n<li> propagate_principles_plane_polarisation.m</li>\n</ul>\n </ul>\n<br>\n<p>The following files and folders may be reused according to the LGPL Version 3+ license as described here: <a>http://www.gnu.org/licenses/lgpl.html </a>\n<ul>\n<li> .debey folder, including: </li>\n<ul>\n<li> 01_README.txt</li>\n<li> fft_propagate.m</li>\n<li> paddedfft2.m</li>\n<li> propagate.m<lid>\n</ul>\n </ul>","citationRequirements":"<p>The files in the folder \".debye\" may be reused according to the LGPL Version 3+ license as described here: <a>http://www.gnu.org/licenses/lgpl.html </a> .\nWhen reusing the files in the \".debye\" folder, reference must be given to the author of the file, James Manton and in line with the LGPL Version 3+ license. </p>\n <br>\n<p>All other files in this dataset may be reused as described in the CC0 public domain dedication: <a >https://creativecommons.org/publicdomain/zero/1.0/ : </a> Our Community Norms <a>(https://dataverse.org/best-practices/dataverse-community-norms)</a> as well as good scientific practices expect that proper credit is given via citation.</p>","fileAccessRequest":true,"metadataBlocks":{"citation":{"displayName":"Citation Metadata","name":"citation","fields":[{"typeName":"title","multiple":false,"typeClass":"primitive","value":"Software for Quantification of the NA dependent change of shape in the image formation of a z-polarised fluorescent molecule using vectorial diffraction simulations"},{"typeName":"author","multiple":true,"typeClass":"compound","value":[{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Ströhl, Florian"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"UiT The Arctic University of Norway"},"authorIdentifierScheme":{"typeName":"authorIdentifierScheme","multiple":false,"typeClass":"controlledVocabulary","value":"ORCID"},"authorIdentifier":{"typeName":"authorIdentifier","multiple":false,"typeClass":"primitive","value":"0000-0002-2603-0780"}}]},{"typeName":"datasetContact","multiple":true,"typeClass":"compound","value":[{"datasetContactName":{"typeName":"datasetContactName","multiple":false,"typeClass":"primitive","value":"Ströhl, Florian"},"datasetContactAffiliation":{"typeName":"datasetContactAffiliation","multiple":false,"typeClass":"primitive","value":"UiT The Arctic University of Norway"},"datasetContactEmail":{"typeName":"datasetContactEmail","multiple":false,"typeClass":"primitive","value":"florian.strohl@uit.no"}}]},{"typeName":"dsDescription","multiple":true,"typeClass":"compound","value":[{"dsDescriptionValue":{"typeName":"dsDescriptionValue","multiple":false,"typeClass":"primitive","value":"The point spread function of a fixed fluorophore with its dipole axis colinear to the optical axis appears donut-shaped when seen through a microscope, but can change to a spot when increasing the tube lens numerical aperture. This phenomenon can be simulated and studied using this Matlab software package, which implements vectorial Jones matrix formalism for the optical setup and the Debye diffraction integral for synthesis of the electric field and intensity distribution in the focal region."},"dsDescriptionDate":{"typeName":"dsDescriptionDate","multiple":false,"typeClass":"primitive","value":"2022-01-04"}}]},{"typeName":"subject","multiple":true,"typeClass":"controlledVocabulary","value":["Physics"]},{"typeName":"keyword","multiple":true,"typeClass":"compound","value":[{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"vectorial diffraction"}},{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"dipole"}},{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"simulation"}},{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"image formation"}},{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"microscopy"}},{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"lithography"}}]},{"typeName":"publication","multiple":true,"typeClass":"compound","value":[{"publicationCitation":{"typeName":"publicationCitation","multiple":false,"typeClass":"primitive","value":"Ströhl, F., Bruggeman, E., Rowlands, C. J., Wolfson, D. L., & Ahluwalia, B. S. (2022). Quantification of the NA dependent change of shape in the image formation of a z-polarized fluorescent molecule using vectorial diffraction simulations. Microscopy Research and Technique, 85( 5), 2016– 2022."},"publicationIDType":{"typeName":"publicationIDType","multiple":false,"typeClass":"controlledVocabulary","value":"doi"},"publicationIDNumber":{"typeName":"publicationIDNumber","multiple":false,"typeClass":"primitive","value":"10.1002/jemt.24060"},"publicationURL":{"typeName":"publicationURL","multiple":false,"typeClass":"primitive","value":"https://doi.org/10.1002/jemt.24060"}}]},{"typeName":"language","multiple":true,"typeClass":"controlledVocabulary","value":["English"]},{"typeName":"producer","multiple":true,"typeClass":"compound","value":[{"producerName":{"typeName":"producerName","multiple":false,"typeClass":"primitive","value":"UiT The Arctic University of Norway"},"producerAbbreviation":{"typeName":"producerAbbreviation","multiple":false,"typeClass":"primitive","value":"UiT"},"producerURL":{"typeName":"producerURL","multiple":false,"typeClass":"primitive","value":"https://en.uit.no/"}}]},{"typeName":"productionDate","multiple":false,"typeClass":"primitive","value":"2022-05-01"},{"typeName":"productionPlace","multiple":true,"typeClass":"primitive","value":["Tromsø, Norway"]},{"typeName":"contributor","multiple":true,"typeClass":"compound","value":[{"contributorType":{"typeName":"contributorType","multiple":false,"typeClass":"controlledVocabulary","value":"Project Leader"},"contributorName":{"typeName":"contributorName","multiple":false,"typeClass":"primitive","value":"Ströhl, Florian"}},{"contributorType":{"typeName":"contributorType","multiple":false,"typeClass":"controlledVocabulary","value":"Related Person"},"contributorName":{"typeName":"contributorName","multiple":false,"typeClass":"primitive","value":"Manton, James"}}]},{"typeName":"grantNumber","multiple":true,"typeClass":"compound","value":[{"grantNumberAgency":{"typeName":"grantNumberAgency","multiple":false,"typeClass":"primitive","value":"European Commission"},"grantNumberValue":{"typeName":"grantNumberValue","multiple":false,"typeClass":"primitive","value":"836355"}},{"grantNumberAgency":{"typeName":"grantNumberAgency","multiple":false,"typeClass":"primitive","value":"The Research Council of Norway"},"grantNumberValue":{"typeName":"grantNumberValue","multiple":false,"typeClass":"primitive","value":"314546"}}]},{"typeName":"distributor","multiple":true,"typeClass":"compound","value":[{"distributorName":{"typeName":"distributorName","multiple":false,"typeClass":"primitive","value":"UiT The Arctic University of Norway"},"distributorAffiliation":{"typeName":"distributorAffiliation","multiple":false,"typeClass":"primitive","value":"UiT The Arctic University of Norway"},"distributorURL":{"typeName":"distributorURL","multiple":false,"typeClass":"primitive","value":"https://dataverse.no/dataverse/uit"}}]},{"typeName":"depositor","multiple":false,"typeClass":"primitive","value":"Ströhl, Florian"},{"typeName":"dateOfDeposit","multiple":false,"typeClass":"primitive","value":"2022-01-04"},{"typeName":"kindOfData","multiple":true,"typeClass":"primitive","value":["software"]},{"typeName":"software","multiple":true,"typeClass":"compound","value":[{"softwareName":{"typeName":"softwareName","multiple":false,"typeClass":"primitive","value":"Matlab"},"softwareVersion":{"typeName":"softwareVersion","multiple":false,"typeClass":"primitive","value":"2021a"}}]}]}},"files":[{"description":"Main Readme file for the whole simulation package.","label":"00_README.txt","restricted":false,"directoryLabel":"Software for Quantification of the NA dependent change of shape in the image formation of a z-polarised fluorescent molecule using vectorial diffraction simulations","version":1,"datasetVersionId":3956,"dataFile":{"id":116133,"persistentId":"doi:10.18710/Z37SBD/VLRESB","pidURL":"https://doi.org/10.18710/Z37SBD/VLRESB","filename":"00_README.txt","contentType":"text/plain","friendlyType":"Plain Text","filesize":884,"description":"Main Readme file for the whole simulation package.","storageIdentifier":"S3://uit-dataverseno-prod01:17e299e3ad8-94ec07f80fdb","rootDataFileId":-1,"md5":"aab6013bcd3b5b191f7937ffd3b9e057","checksum":{"type":"MD5","value":"aab6013bcd3b5b191f7937ffd3b9e057"},"tabularData":false,"creationDate":"2022-01-05","publicationDate":"2022-01-05","fileAccessRequest":true}},{"description":"Readme file for Debye backbone by James Manton.","label":"01_README.txt","restricted":false,"directoryLabel":"Software for Quantification of the NA dependent change of shape in the image formation of a z-polarised fluorescent molecule using vectorial diffraction simulations/.debye","version":1,"datasetVersionId":3956,"dataFile":{"id":116125,"persistentId":"doi:10.18710/Z37SBD/ALULAK","pidURL":"https://doi.org/10.18710/Z37SBD/ALULAK","filename":"01_README.txt","contentType":"text/plain","friendlyType":"Plain Text","filesize":186,"description":"Readme file for Debye backbone by James Manton.","storageIdentifier":"S3://uit-dataverseno-prod01:17e299e3996-f16e6338ca08","rootDataFileId":-1,"md5":"657bc27a7980345e996a4b259667af0e","checksum":{"type":"MD5","value":"657bc27a7980345e996a4b259667af0e"},"tabularData":false,"creationDate":"2022-01-05","publicationDate":"2022-01-05","fileAccessRequest":true}},{"description":"Readme file for dipole propagator with Jones matrices by Florian Ströhl.","label":"02_README.txt","restricted":false,"directoryLabel":"Software for Quantification of the NA dependent change of shape in the image formation of a z-polarised fluorescent molecule using vectorial diffraction simulations/.dipole","version":1,"datasetVersionId":3956,"dataFile":{"id":116126,"persistentId":"doi:10.18710/Z37SBD/5ZFHJV","pidURL":"https://doi.org/10.18710/Z37SBD/5ZFHJV","filename":"02_README.txt","contentType":"text/plain","friendlyType":"Plain Text","filesize":190,"description":"Readme file for dipole propagator with Jones matrices by Florian Ströhl.","storageIdentifier":"S3://uit-dataverseno-prod01:17e299e3a63-64654864077b","rootDataFileId":-1,"md5":"fb6c69f9a369e3a12a5e27b699426ddb","checksum":{"type":"MD5","value":"fb6c69f9a369e3a12a5e27b699426ddb"},"tabularData":false,"creationDate":"2022-01-05","publicationDate":"2022-01-05","fileAccessRequest":true}},{"description":"Main program file. Only this file needs to be modified for parameter setting or alternative simulations.","label":"dipole_simulator.m","restricted":false,"directoryLabel":"Software for Quantification of the NA dependent change of shape in the image formation of a z-polarised fluorescent molecule using vectorial diffraction simulations","version":1,"datasetVersionId":3956,"dataFile":{"id":116130,"persistentId":"doi:10.18710/Z37SBD/AKOIGM","pidURL":"https://doi.org/10.18710/Z37SBD/AKOIGM","filename":"dipole_simulator.m","contentType":"text/x-matlab","friendlyType":"MATLAB Source Code","filesize":5312,"description":"Main program file. Only this file needs to be modified for parameter setting or alternative simulations.","storageIdentifier":"S3://uit-dataverseno-prod01:17e299e3afd-e41e50fa97fe","rootDataFileId":-1,"md5":"1bc4a49c2ffe32e795dd1279418a75f7","checksum":{"type":"MD5","value":"1bc4a49c2ffe32e795dd1279418a75f7"},"tabularData":false,"creationDate":"2022-01-05","publicationDate":"2022-01-05","fileAccessRequest":true}},{"label":"fft_propagate.m","restricted":false,"directoryLabel":"Software for Quantification of the NA dependent change of shape in the image formation of a z-polarised fluorescent molecule using vectorial diffraction simulations/.debye","version":1,"datasetVersionId":3956,"dataFile":{"id":116131,"persistentId":"doi:10.18710/Z37SBD/UV9F7L","pidURL":"https://doi.org/10.18710/Z37SBD/UV9F7L","filename":"fft_propagate.m","contentType":"text/x-matlab","friendlyType":"MATLAB Source Code","filesize":1059,"storageIdentifier":"S3://uit-dataverseno-prod01:17e299e39c7-4454a81c736f","rootDataFileId":-1,"md5":"5eb92f346c9ba1a88edf30a72c8e2a19","checksum":{"type":"MD5","value":"5eb92f346c9ba1a88edf30a72c8e2a19"},"tabularData":false,"creationDate":"2022-01-05","publicationDate":"2022-01-05","fileAccessRequest":true}},{"label":"paddedfft2.m","restricted":false,"directoryLabel":"Software for Quantification of the NA dependent change of shape in the image formation of a z-polarised fluorescent molecule using vectorial diffraction simulations/.debye","version":1,"datasetVersionId":3956,"dataFile":{"id":116127,"persistentId":"doi:10.18710/Z37SBD/O6PEM9","pidURL":"https://doi.org/10.18710/Z37SBD/O6PEM9","filename":"paddedfft2.m","contentType":"text/x-matlab","friendlyType":"MATLAB Source Code","filesize":630,"storageIdentifier":"S3://uit-dataverseno-prod01:17e299e39fd-37427c9ac8d1","rootDataFileId":-1,"md5":"08e7113640223e5615ce4fdabe0643c3","checksum":{"type":"MD5","value":"08e7113640223e5615ce4fdabe0643c3"},"tabularData":false,"creationDate":"2022-01-05","publicationDate":"2022-01-05","fileAccessRequest":true}},{"label":"polarisation_in_back_aperture.m","restricted":false,"directoryLabel":"Software for Quantification of the NA dependent change of shape in the image formation of a z-polarised fluorescent molecule using vectorial diffraction simulations/.dipole","version":1,"datasetVersionId":3956,"dataFile":{"id":116128,"persistentId":"doi:10.18710/Z37SBD/LGJGIP","pidURL":"https://doi.org/10.18710/Z37SBD/LGJGIP","filename":"polarisation_in_back_aperture.m","contentType":"text/x-matlab","friendlyType":"MATLAB Source Code","filesize":1747,"storageIdentifier":"S3://uit-dataverseno-prod01:17e299e3a8a-803364a4e121","rootDataFileId":-1,"md5":"cc7f14e07f255253323054b24912cac6","checksum":{"type":"MD5","value":"cc7f14e07f255253323054b24912cac6"},"tabularData":false,"creationDate":"2022-01-05","publicationDate":"2022-01-05","fileAccessRequest":true}},{"label":"propagate.m","restricted":false,"directoryLabel":"Software for Quantification of the NA dependent change of shape in the image formation of a z-polarised fluorescent molecule using vectorial diffraction simulations/.debye","version":1,"datasetVersionId":3956,"dataFile":{"id":116132,"persistentId":"doi:10.18710/Z37SBD/DWYXXW","pidURL":"https://doi.org/10.18710/Z37SBD/DWYXXW","filename":"propagate.m","contentType":"text/x-matlab","friendlyType":"MATLAB Source Code","filesize":874,"storageIdentifier":"S3://uit-dataverseno-prod01:17e299e3a26-ca6f2831cee7","rootDataFileId":-1,"md5":"8e39e1880d1a1ea352d8f7343438ec7b","checksum":{"type":"MD5","value":"8e39e1880d1a1ea352d8f7343438ec7b"},"tabularData":false,"creationDate":"2022-01-05","publicationDate":"2022-01-05","fileAccessRequest":true}},{"label":"propagate_principle_plane_polarisation.m","restricted":false,"directoryLabel":"Software for Quantification of the NA dependent change of shape in the image formation of a z-polarised fluorescent molecule using vectorial diffraction simulations/.dipole","version":1,"datasetVersionId":3956,"dataFile":{"id":116129,"persistentId":"doi:10.18710/Z37SBD/BNQWDJ","pidURL":"https://doi.org/10.18710/Z37SBD/BNQWDJ","filename":"propagate_principle_plane_polarisation.m","contentType":"text/x-matlab","friendlyType":"MATLAB Source Code","filesize":1329,"storageIdentifier":"S3://uit-dataverseno-prod01:17e299e3ab1-6151a369d684","rootDataFileId":-1,"md5":"233be5802ad0903e22abf305fcdbd85b","checksum":{"type":"MD5","value":"233be5802ad0903e22abf305fcdbd85b"},"tabularData":false,"creationDate":"2022-01-05","publicationDate":"2022-01-05","fileAccessRequest":true}}],"citation":"Ströhl, Florian, 2022, \"Software for Quantification of the NA dependent change of shape in the image formation of a z-polarised fluorescent molecule using vectorial diffraction simulations\", https://doi.org/10.18710/Z37SBD, DataverseNO, V1"}}