Supporting data for: Postglacial history of a widespread forest fungus in Europe suggests migration out of multiple refugia followed by admixture (doi:10.18710/E9Y4MU)

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Supporting data for: Postglacial history of a widespread forest fungus in Europe suggests migration out of multiple refugia followed by admixture

doi:10.18710/E9Y4MU

DataverseNO

2025-01-29

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Lu, Dabao Sun, 2025, "Supporting data for: Postglacial history of a widespread forest fungus in Europe suggests migration out of multiple refugia followed by admixture", https://doi.org/10.18710/E9Y4MU, DataverseNO, V1

Supporting data for: Postglacial history of a widespread forest fungus in Europe suggests migration out of multiple refugia followed by admixture

doi:10.18710/E9Y4MU

Lu, Dabao Sun (University of Oslo)

Skrede, Inger

Methlie, Ine-Susanne Hopland

Kauserud, Håvard

Lu, Dabao Sun

Peris, David

Sønstebø, Jørn Henrik

Maurice, Sundy

Andersen, Anneli

University of Oslo

BWA

GATK4

BCFtools

PLINK

RCN 274337

DataverseNO

University of Oslo

Lu, Dabao Sun

Lü, Dabao Sun

2024-12-15

Filtered Illumina DNA sequence data of Trichaptum in the form of single nucleotide polymorphic (SNP) data files (VCF) used for population genomic analyses.

https://doi.org/10.18710/E9Y4MU

Medicine, Health and Life Sciences, Mycology, Hymenochaetales, Postglacial history, Phylogeography, Population genomics, Suture zone

While postglacial migration patterns have been well-studied in plants and animals in Europe, the same is not true for microorganisms such as fungi, and it remains unclear whether fungi have followed the same postglacial migration trajectories. Our main aim in this study was to trace the post-glacial history of the wood decay fungus T. abietinum in Europe by asking whether recolonization of northern Europe has happened from multiple refugia. We hypothesise that T. abietinum has co-migrated together with its main host trees from different Southern and Eastern European refugia. Further, we ask if there has been secondary contact between lineages spreading from separate refugia, and whether contact zones among them can be found. Since the fungus has multiple host tree species that resided in different refugia, we hypothesize that admixture of lineages from different refugia has taken place, leading to a complex genetic structure in European populations of T. abietinum. To test these hypotheses, we conducted detailed population genomic analyses of genetic diversity and demographic history based on available full genome sequences of a large set of European samples of T. abietinum.

2022-2024

Norway, Finland, Estonia, France, Portugal, Spain, Italy, Switzerland, Austria, Poland, Czech Republic, Russian Federation, Georgia

machine-readable text

<a href="http://creativecommons.org/publicdomain/zero/1.0">CC0 1.0</a>

Geographic information on samples available in supplementary tables of: https://doi.org/10.1371/journal.pgen.1010097 https://doi.org/10.1016/j.cub.2024.08.046

Raw reads uploaded to NCBI: NCBI SRA #PRJNA1142248 NCBI SRA #PRJNA679164

VCF-file for Lu et al. (2024): DRYAD: https://doi.org/10.5061/dryad.z8w9ghxnw.

Peris D, Lu DS, Kinneberg VB, Methlie IS, Dahl MS, et al. (2022) Large-scale fungal strain sequencing unravels the molecular diversity in mating loci maintained by long-term balancing selection. PLOS Genetics 18(3): e1010097. https://doi.org/10.1371/journal.pgen.1010097

Peris D, Lu DS, Kinneberg VB, Methlie IS, Dahl MS, et al. (2022) Large-scale fungal strain sequencing unravels the molecular diversity in mating loci maintained by long-term balancing selection. PLOS Genetics 18(3): e1010097. https://doi.org/10.1371/journal.pgen.1010097

Dabao Sun Lu, David Peris, Jørn Henrik Sønstebø, Timothy Y. James, Loren H. Rieseberg, Sundy Maurice, Håvard Kauserud, Mark Ravinet, Inger Skrede. (2024) Reticulate evolution and rapid development of reproductive barriers upon secondary contact in a forest fungus. Current Biology, 34 (19,) 4513-4525.e6, https://doi.org/10.1016/j.cub.2024.08.046.

Dabao Sun Lu, David Peris, Jørn Henrik Sønstebø, Timothy Y. James, Loren H. Rieseberg, Sundy Maurice, Håvard Kauserud, Mark Ravinet, Inger Skrede. (2024) Reticulate evolution and rapid development of reproductive barriers upon secondary contact in a forest fungus. Current Biology, 34 (19,) 4513-4525.e6, https://doi.org/10.1016/j.cub.2024.08.046.

Postglacial history of a widespread forest fungus in Europe suggests migration out of multiple refugia followed by admixture Dabao Sun Lu, Ine-Susanne Hopland Methlie, Jørn Henrik Sønstebø, Anneli Andersen, David Peris, Sundy Maurice, Håvard Kauserud, Inger Skrede. (2025) Submitted for review.

Postglacial history of a widespread forest fungus in Europe suggests migration out of multiple refugia followed by admixture Dabao Sun Lu, Ine-Susanne Hopland Methlie, Jørn Henrik Sønstebø, Anneli Andersen, David Peris, Sundy Maurice, Håvard Kauserud, Inger Skrede. (2025) Submitted for review.

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