|
View: |
Part 1: Document Description
|
|
Citation |
|
|---|---|
|
Title: |
Supporting data for: A Natural Hybrid Zone Between Divergent Ecotypes of a Wood-Decay Fungus in Fennoscandia |
|
Identification Number: |
doi:10.18710/SQ8XSO |
|
Distributor: |
DataverseNO |
|
Date of Distribution: |
2026-06-22 |
|
Version: |
1 |
|
Bibliographic Citation: |
Ekeberg, Ingvild Myhre, 2026, "Supporting data for: A Natural Hybrid Zone Between Divergent Ecotypes of a Wood-Decay Fungus in Fennoscandia", https://doi.org/10.18710/SQ8XSO, DataverseNO, V1 |
|
Citation |
|
|
Title: |
Supporting data for: A Natural Hybrid Zone Between Divergent Ecotypes of a Wood-Decay Fungus in Fennoscandia |
|
Identification Number: |
doi:10.18710/SQ8XSO |
|
Authoring Entity: |
Ekeberg, Ingvild Myhre (University of Oslo) |
|
Other identifications and acknowledgements: |
Skrede, Inger |
|
Other identifications and acknowledgements: |
Kauserud, Håvard |
|
Other identifications and acknowledgements: |
Naas, Adam Eindride |
|
Other identifications and acknowledgements: |
Krabberød, Anders Kristian |
|
Other identifications and acknowledgements: |
Peris, David |
|
Other identifications and acknowledgements: |
Bysting, Anne Krag |
|
Other identifications and acknowledgements: |
David, Marie |
|
Other identifications and acknowledgements: |
Hofton, Tom Hellik |
|
Producer: |
University of Oslo |
|
Software used in Production: |
BWA |
|
Software used in Production: |
SAMtools |
|
Software used in Production: |
BCFtools |
|
Software used in Production: |
VCFtools |
|
Distributor: |
DataverseNO |
|
Distributor: |
University of Oslo |
|
Access Authority: |
Ekberg, Ingvild Myhre |
|
Depositor: |
Ekeberg, Ingvild Myhre |
|
Date of Deposit: |
2025-11-21 |
|
Holdings Information: |
https://doi.org/10.18710/SQ8XSO |
|
Study Scope |
|
|
Keywords: |
Medicine, Health and Life Sciences, hybrid zone, secondary contact, adaptation, demography, population genomics, wood-decay fungi |
|
Abstract: |
Postglacial migration out of glacial refugia has led to secondary contact between diverging lineages, creating numerous contact zones across European taxa. In fungi, especially in wood-decay fungi, such contact zones have been poorly studied. Yet, contact zones are natural “evolutionary experiments” where speciation, reproductive barriers and hybrid zone dynamics can be studied. We investigated the population structure, hybrid zone dynamics and demographic history of the wood-decay fungus Meruliopsis taxicola in Fennoscandia, using whole-genome resequencing data combined with distribution modelling. Our results show that there exist two ecologically and genomically divergent ecotypes of M. taxicola in Fennoscandia, corresponding to a Coastal and Continental ecotype, which probably diverged during the last glaciation and subsequently migrated into Fennoscandia. Moreover, the ecotypes are mating, and there is a narrow hybrid zone between the distributions of the ecotypes. The nature of the hybrid zone remains unclear, but there is evidence suggesting that there is asymmetrical gene flow from the Continental ecotype to the Coastal ecotype. Future work should test hypotheses regarding hybrid fitness through phenotypic experiments to conclude further about the pattern of asymmetrical introgression, and the stability of the hybrid zone. |
|
Time Period: |
2020-10-01-2025-12-01 |
|
Date of Collection: |
2020-10-01-2025-12-01 |
|
Country: |
Norway, Sweden, Finland, Russian Federation |
|
Geographic Coverage: |
Caucasus |
|
Geographic Unit(s): |
Country |
|
Kind of Data: |
Whole genome sequencing data |
|
Kind of Data: |
VCF |
|
Methodology and Processing |
|
|
Sources Statement |
|
|
Data Access |
|
|
Notes: |
<a href="http://creativecommons.org/publicdomain/zero/1.0">CC0 1.0</a> |
|
Other Study Description Materials |
|
|
Related Publications |
|
|
Citation |
|
|
Title: |
Submitted for review |
|
Bibliographic Citation: |
Submitted for review |
|
Label: |
00_README_file_template_general_v_2_4.txt |
|
Text: |
Read me file |
|
Notes: |
text/plain |
|
Label: |
m.taxicola_maf0.011_biallelic_indremoved_with.outgroup_nomiss_no14no15_bcftoolsld0.8_25kb.vcf.gz |
|
Text: |
VCF file with outgroup filtered on maf and no missingness, and LD pruned. |
|
Notes: |
application/x-gzip |
|
Label: |
m.taxicola_maf0.011_biallelic_noindels_no14no15_nooutgroup.vcf.gz |
|
Text: |
VCF file without the outgroup and filtered on Maf. |
|
Notes: |
application/x-gzip |
|
Label: |
m.taxicola_maf0.011_biallelic_noindels_onlyvariants_no14no15_nomiss_bcftools0.8_25kb.vcf.gz |
|
Text: |
VCF file without the outgroup, filtered on Maf and no missingness, and LD pruned. |
|
Notes: |
application/x-gzip |
|
Label: |
m.taxicola_maf0.011_biallelic_noindels_onlyvariants_no14no15_nomiss.vcf.gz |
|
Text: |
VCF file without the outgroup, filtered on Maf and no missingness. |
|
Notes: |
application/x-gzip |