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Part 1: Document Description
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Citation |
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Title: |
Replication Data for: A genome-wide association study of freezing tolerance in red clover (Trifolium pratense L.) germplasm of European origin |
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Identification Number: |
doi:10.18710/WF1AGU |
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Distributor: |
DataverseNO |
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Date of Distribution: |
2023-04-03 |
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Version: |
1 |
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Bibliographic Citation: |
Zanotto, Stefano; Ergon, Åshild, 2023, "Replication Data for: A genome-wide association study of freezing tolerance in red clover (Trifolium pratense L.) germplasm of European origin", https://doi.org/10.18710/WF1AGU, DataverseNO, V1 |
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Citation |
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Title: |
Replication Data for: A genome-wide association study of freezing tolerance in red clover (Trifolium pratense L.) germplasm of European origin |
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Identification Number: |
doi:10.18710/WF1AGU |
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Authoring Entity: |
Zanotto, Stefano (Norwegian University of Life Sciences (NMBU)) |
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Ergon, Åshild (Norwegian University of Life Sciences (NMBU)) |
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Producer: |
Norwegian University of Life Sciences (NMBU) |
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Grant Number: |
727312 |
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Distributor: |
DataverseNO |
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Distributor: |
Norwegian University of Life Sciences (NMBU) |
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Access Authority: |
Ergon, Åshild |
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Depositor: |
Ergon, Åshild Gunilla |
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Date of Deposit: |
2023-03-19 |
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Holdings Information: |
https://doi.org/10.18710/WF1AGU |
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Study Scope |
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Keywords: |
Agricultural Sciences, Medicine, Health and Life Sciences, freezing tolerance, GWAS, linkage disequilibrium, red clover, Trifolium pratense |
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Abstract: |
Freezing tolerance and genomic data for red clover accessions used for a genome-wide association study (GWAS) to identify loci associated with freezing tolerance in the EUCLEC collection of mostly European red clover accessions. Freezing tolerance was measured as LT50. The genomic data are allele frequencies of single nucleotide polymorphisms (SNPs) and short read-backed haplotypes called in genotype by sequencing-data on pools of DNA (pool-GBS); one pool of 200 individuals per accession. The data were used to generate genomic relationship matrices. SNP data were used to calculate linkage disequilibrium. |
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Kind of Data: |
Survival data |
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Kind of Data: |
LT50 data |
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Kind of Data: |
genomic relationship matrix |
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Kind of Data: |
GWAS results |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Notes: |
<a href="http://creativecommons.org/publicdomain/zero/1.0">CC0 1.0</a> |
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Other Study Description Materials |
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Related Publications |
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Citation |
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Title: |
Zanotto S, Ruttink T, Pégard M, Skøt L, Grieder C, Kölliker R, et al. A genome-wide association study of freezing tolerance in red clover (Trifolium pratense L.) germplasm of European origin. Frontiers in Plant Science. 2023;14. |
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Identification Number: |
10.3389/fpls.2023.1189662 |
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Bibliographic Citation: |
Zanotto S, Ruttink T, Pégard M, Skøt L, Grieder C, Kölliker R, et al. A genome-wide association study of freezing tolerance in red clover (Trifolium pratense L.) germplasm of European origin. Frontiers in Plant Science. 2023;14. |
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Label: |
00_README.txt |
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Notes: |
text/plain |
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Label: |
1_LT50_DATA.csv |
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Text: |
Freezing tolerance (LT50) data for all accessions |
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Notes: |
text/comma-separated-values |
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Label: |
2_SNP_FILTERED_allele frequencies per accession.csv |
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Text: |
Allele frequencies per accession for all SNPs used in the analyses |
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Notes: |
text/comma-separated-values |
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Label: |
3_HAPLOTYPE_FILTERED_allele frequencies per accession.csv |
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Text: |
Allele frequencies per accession for all haplotype markers used in the analyses |
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Notes: |
text/comma-separated-values |
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Label: |
4_Genomic Relationship Matrix_SNPs.csv |
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Text: |
Genomic relationship matrix based on SNP markers |
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Notes: |
text/comma-separated-values |
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Label: |
5_Genomic Relationship Matrix_HAPLOTYPES.csv |
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Text: |
Genomic relationship matrix based on haplotype markers |
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Notes: |
text/comma-separated-values |