Supplement for: Adaptive cell wall thickening in Enterococcus faecalis is associated with decreased vancomycin susceptibility

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Wagner, Theresa Maria; Pöntinen, Anna; Rubaye, Mushtaq AL; Sundsfjord, Arnfinn; Hegstad, Kristin, 2023, "Supplement for: Adaptive cell wall thickening in Enterococcus faecalis is associated with decreased vancomycin susceptibility", https://doi.org/10.18710/5QMKDN, DataverseNO, V2
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Description
Supplement for  «Adaptive cell wall thickening in Enterococcus faecalis is associated with decreased vancomycin susceptibility»   Table1: Supplementary_table1_Snpdist.csv SNP distance of isolates as calculated using Snippy with E03812 as reference. Columns and rows are strains as indicated.   Table2: Supplementary_table2_Snpcomparison_psortb.csv SNP annotation using SnpEff and subcellular localization of their corresponding proteins was predicted using PsortB. Columns indicate REF=SNP in the reference, ALT= SNP in the sample isolate, VARIANT=type of variant (SnpEff), psortb_localisation=subcellular localization predicted by psortB, psortb_score= score from psortB, product= gene annotation. Subsequent columns indicate presence/absence of a SNP within each strain. (2023-10-23)
Subject Medicine, Health and Life Sciences
Keyword Enterococci, glycopeptides, Vancomycin Resistent Enterococci, Cell wall, Cell envelope, SNP
Related Publication Wagner, T. M., Pöntinen, A. K., AL Rubaye, M., Sundsfjord, A., & Hegstad, K. (2024). Adaptive cell wall thickening in Enterococcus faecalis is associated with decreased vancomycin susceptibility. Clinical Microbiology and Infection, 30(3), 396.e1-396.e5. https://doi.org/10.1016/j.cmi.2023.12.002 doi: 10.1016/j.cmi.2023.12.002
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1_Supplementary_table1_Snpdist_v2.csv
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