Persistent Identifier
|
doi:10.18710/E9Y4MU |
Publication Date
|
2025-01-29 |
Title
| Supporting data for: Postglacial history of a widespread forest fungus in Europe suggests migration out of multiple refugia followed by admixture |
Author
| Lu, Dabao Sun (University of Oslo) - ORCID: 0000-0001-8257-307X |
Point of Contact
|
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Lu, Dabao Sun (University of Oslo) |
Description
| While postglacial migration patterns have been well-studied in plants and animals in Europe, the same is not true for microorganisms such as fungi, and it remains unclear whether fungi have followed the same postglacial migration trajectories. Our main aim in this study was to trace the post-glacial history of the wood decay fungus T. abietinum in Europe by asking whether recolonization of northern Europe has happened from multiple refugia. We hypothesise that T. abietinum has co-migrated together with its main host trees from different Southern and Eastern European refugia. Further, we ask if there has been secondary contact between lineages spreading from separate refugia, and whether contact zones among them can be found. Since the fungus has multiple host tree species that resided in different refugia, we hypothesize that admixture of lineages from different refugia has taken place, leading to a complex genetic structure in European populations of T. abietinum. To test these hypotheses, we conducted detailed population genomic analyses of genetic diversity and demographic history based on available full genome sequences of a large set of European samples of T. abietinum. (2024) |
Subject
| Medicine, Health and Life Sciences |
Keyword
| Mycology https://data.ub.uio.no/skosmos/realfagstermer/en/page/c013817 (Realfagstermer) https://data.ub.uio.no/skosmos/realfagstermer/en/
Hymenochaetales
Postglacial history
Phylogeography https://data.ub.uio.no/skosmos/realfagstermer/en/page/c000684 (Realfagstermer) https://data.ub.uio.no/skosmos/realfagstermer/en/
Population genomics
Suture zone |
Related Publication
| Peris D, Lu DS, Kinneberg VB, Methlie IS, Dahl MS, et al. (2022) Large-scale fungal strain sequencing unravels the molecular diversity in mating loci maintained by long-term balancing selection. PLOS Genetics 18(3): e1010097. https://doi.org/10.1371/journal.pgen.1010097 https://doi.org/10.1371/journal.pgen.1010097
Dabao Sun Lu, David Peris, Jørn Henrik Sønstebø, Timothy Y. James, Loren H. Rieseberg, Sundy Maurice, Håvard Kauserud, Mark Ravinet, Inger Skrede. (2024) Reticulate evolution and rapid development of reproductive barriers upon secondary contact in a forest fungus. Current Biology, 34 (19,) 4513-4525.e6, https://doi.org/10.1016/j.cub.2024.08.046. https://doi.org/10.1016/j.cub.2024.08.046
Postglacial history of a widespread forest fungus in Europe suggests migration out of multiple refugia followed by admixture Dabao Sun Lu, Ine-Susanne Hopland Methlie, Jørn Henrik Sønstebø, Anneli Andersen, David Peris, Sundy Maurice, Håvard Kauserud, Inger Skrede. (2025) Submitted for review. |
Language
| English |
Producer
| University of Oslo (UiO) https://www.uio.no/english/ |
Contributor
| Supervisor : Skrede, Inger
Researcher : Methlie, Ine-Susanne Hopland
Supervisor : Kauserud, Håvard
Researcher : Lu, Dabao Sun
Researcher : Peris, David
Researcher : Sønstebø, Jørn Henrik
Researcher : Maurice, Sundy
Project Member : Andersen, Anneli |
Funding Information
| Research Council of Norway: RCN 274337 |
Distributor
| University of Oslo (UiO) https://dataverse.no/dataverse/uio |
Depositor
| Lü, Dabao Sun |
Deposit Date
| 2024-12-15 |
Date of Collection
| Start Date: 2022 ; End Date: 2024 |
Data Type
| machine-readable text |
Series
| Filtered Illumina DNA sequence data of Trichaptum in the form of single nucleotide polymorphic (SNP) data files (VCF) used for population genomic analyses. |
Software
| BWA, Version: 0.7.17
GATK4, Version: 1.4.0
BCFtools, Version: 1.10.2
PLINK, Version: 1.9 |
Related Material
| Geographic information on samples available in supplementary tables of: https://doi.org/10.1371/journal.pgen.1010097 https://doi.org/10.1016/j.cub.2024.08.046 |
Related Dataset
| Raw reads uploaded to NCBI: NCBI SRA #PRJNA1142248 NCBI SRA #PRJNA679164; VCF-file for Lu et al. (2024): DRYAD: https://doi.org/10.5061/dryad.z8w9ghxnw. |