Replication Data for: Parasite infection shapes the pathobiome and behavior of marine zooplankton

Version 1.0
Garvang, Even Sletteng; Heuschele, Jan; Konestabo, Heidi Sjursen; Andersen, Tom; Riemann, Lasse; Titelman, Josefin, 2025, "Replication Data for: Parasite infection shapes the pathobiome and behavior of marine zooplankton", https://doi.org/10.18710/LGZVVT, DataverseNO, V1
Learn about Data Citation Standards.
    The dataset is too large to download. Please select the files you need from the files table.
Contact Owner Share
Dataset Metrics
6 Downloads
Description

Data and scripts for replicating the results in the article `Garvang et al., 2025. Parasite infection shapes the pathobiome and behavior of marine zooplankton. Limnology and Oceanography Letters`.

We collected Calanus helgolandicus from the Oslofjord, both healthy individuals and infected with a conspicuous "yellow-hyphal" parasite that changes the host behavior. We incubated them for 7 days and measured behavior and survival. At the start and end of the incubation we sampled animals for 16S rRNA microbial community analysis. Infected Calanus had higher mortality, more risky behavior and altered microbiomes compared to the uninfected.

The repository contains a workflow description of how to process and analyze the raw 16S, survival, and behavior data, and all necessary scripts. The raw 16S sequence data is not available in this repository, but has been deposited to the European Nucleotide Archive with project accession PRJEB84185.

(2025-01-20)

Abstract from related publication:

When assessing the total impact of disease in a host, it is important to consider not only the disease-carrying agent but also all symbionts, as they affect and are affected by the course of disease. This concept of a pathobiome is increasingly recognized in disease ecology, but is not well-investigated in natural systems. Copepods are key organisms in marine ecosystems and host a variety of symbionts, including bacteria and eukaryotic parasites. We investigated the impact of a taxonomically uncertain yellow-hyphal parasite (YHP) on its copepod host Calanus helgolandicus with an incubation experiment, comparing survival, behavior, and microbiomes of uninfected and infected hosts. Infected hosts had higher mortality, and altered behavior which can increase predation risk. The microbiomes differed between infected and uninfected hosts, and we identified several potential contributing taxa to the Calanus-YHP pathobiome using model-based ordination.

(2025-09-16)
Subject Medicine, Health and Life Sciences
Keyword Pathobiomes, Calanus helgolandicus, Copepoda, Yellow-hyphal parasite, Microbiomes
Related Publication Even Sletteng Garvang, Jan Heuschele, Heidi Sjursen Konestabo, Tom Andersen, Lasse Riemann, and Josefin Titelman. 2025. Parasite infection shapes the pathobiome and behavior of marine zooplankton. Limnology and Oceanography Letters (submitted).
License/Data Use Agreement

CC0 1.0

Table
Tree
Filter by
1 to 10 of 40 Files
00_README.txt
Plain Text - 10.4 KB
Published Sep 17, 2025
2 Downloads
MD5: 871279d2d5c16276359247c2e893b7ea
Preview "00_README.txt"
fig-1-survival-behavior.R
R Syntax - 9.1 KB
Published Sep 17, 2025
1 Download
MD5: ec680f06b457cd8ab7da9836f038968a
Preview "fig-1-survival-behavior.R"
fig-2A-2C-3-GLLVM.R
R Syntax - 12.8 KB
Published Sep 17, 2025
0 Downloads
MD5: 487c024d952cbcce83662cdae845203c
Preview "fig-2A-2C-3-GLLVM.R"
fig-2B-S2-diversity.R
R Syntax - 6.1 KB
Published Sep 17, 2025
0 Downloads
MD5: 5f7e5d53dc9b73f659f1ca7da202a0ae
Preview "fig-2B-S2-diversity.R"
fig-S1-GLLVM-w-dead.R
R Syntax - 4.9 KB
Published Sep 17, 2025
0 Downloads
MD5: f49def62b7990c1486c124f8f173ca69
Preview "fig-S1-GLLVM-w-dead.R"
fig-S3-GLLVM-w-water.R
R Syntax - 5.1 KB
Published Sep 17, 2025
0 Downloads
MD5: 4b71de0ed1d32e0d9d3dff5f6ac9ba84
Preview "fig-S3-GLLVM-w-water.R"
microbiome-full-workflow.html
HTML - 1.1 MB
Published Sep 17, 2025
0 Downloads
MD5: 83a2ae996656d90e149beb300c2872ae
Preview "microbiome-full-workflow.html"
MicrobiomeVideo.zip
ZIP Archive - 10.5 GB
Published Sep 17, 2025
0 Downloads
MD5: 1bbac68d566ad5cf780f34a2b41364dd
Preview "MicrobiomeVideo.zip"
asv_bac_remove20tons_removesinglesamp.tsv
data/Tab-Separated Values - 144.9 KB
Published Sep 17, 2025
0 Downloads
MD5: 35d5eae3dde37f7281cad02da7a5ea6e
Preview "data/asv_bac_remove20tons_removesinglesamp.tsv"
gllvm-cop-incwater-seawater.rds
data/Unknown - 175.2 MB
Published Sep 17, 2025
0 Downloads
MD5: 8ad8fb46c748216a4d2430eebbd218a7
Edit File

This file has already been deleted (or replaced) in the current version. It may not be edited.

Restrict Access

Restricting limits access to published files. People who want to use the restricted files can request access by default. If you disable request access, you must add information about access to the Terms of Access field.

Learn about restricting files and dataset access in the User Guide.

Enable access request
You must enable request access or add terms of access to restrict file access.
Save Changes
Edit Embargo

The selected file or files have already been published. Contact an administrator to change the embargo date or reason of the file or files.
Edit Retention Period

The selected file or files have already been published. Contact an administrator to change the retention period date or reason of the file or files.
Delete Files

The file will be deleted after you click on the Delete button.

Files will not be removed from previously published versions of the dataset.

Select File(s)

Please select one or more files.

Share Dataset

Share this dataset on your favorite social media networks.

Continue
Dataset Citations

Citations for this dataset are retrieved from Crossref via DataCite using Make Data Count standards. For more information about dataset metrics, please refer to the User Guide.

Sorry, no citations were found.
Inaccessible Files Selected

The selected file(s) may not be downloaded because you have not been granted access or the file(s) have a retention period that has expired or the files can only be transferred via Globus.

You may request access to any restricted file(s) by clicking the Request Access button.

Ineligible Files Selected

The selected file(s) may not be transferred because you have not been granted access or the file(s) have a retention period that has expired or the files are not Globus accessible.

You may request access to any restricted file(s) by clicking the Request Access button.

Download Options

The files selected are too large to download as a ZIP.

You can select individual files that are below the 4.7 GB download limit from the files table, or use the Data Access API for programmatic access to the files.

Select File(s)

Please select a file or files to be downloaded.

Inaccessible Files Selected

The selected file(s) may not be downloaded because you have not been granted access or the file(s) have a retention period that has expired.

Click Continue to download the files you have access to download.

Ineligible Files Selected

Some file(s) cannot be transferred. (They are restricted, embargoed, with an expired retention period, or not Globus accessible.)

Click Continue to transfer the elligible files.

Delete Dataset

Are you sure you want to delete this dataset and all of its files? You cannot undelete this dataset.

Delete Draft Version

Are you sure you want to delete this draft version? Files will be reverted to the most recently published version. You cannot undelete this draft.

Unpublished Dataset Preview URL

Preview URL can only be used with unpublished versions of datasets.

Unpublished Dataset Preview URL

Are you sure you want to disable the Preview URL? If you have shared the Preview URL with others they will no longer be able to use it to access your unpublished dataset.

Delete Files

The file(s) will be deleted after you click on the Delete button.

Files will not be removed from previously published versions of the dataset.

Compute

This dataset contains restricted files you may not compute on because you have not been granted access.

Deaccession Dataset

Are you sure you want to deaccession? This is permanent and the selected version(s) will no longer be viewable by the public.

Deaccession Dataset

Are you sure you want to deaccession this dataset? This is permanent an it will no longer be viewable by the public.

Version Differences Details

Please select two versions to view the differences.

Version Differences Details
 
Version:
Last Updated:
Version:
Last Updated:
Select File(s)

Please select a file or files for access request.

Select File(s)

Embargoed files cannot be accessed. Please select an unembargoed file or files for your access request.

Edit Tags

Select existing file tags or create new tags to describe your files. Each file can have more than one tag.

Request Access

  You need to Log In to request access.

Dataset Terms

Please confirm and/or complete the information needed below in order to request access to files in this dataset.

This dataset is made available under the following terms. Please confirm and/or complete the information needed below in order to continue.

Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation shown on the dataset page.

CC0 1.0

Preview Guestbook

Upon downloading files the guestbook asks for the following information.

Account Information

Package File Download

Use the Download URL in a Wget command or a download manager to download this package file. Download via web browser is not recommended. User Guide - Downloading a Dataverse Package via URL

https://dataverse.no/api/access/datafile/

Compute Batch
Clear Batch
Dataset Persistent Identifier Change Compute Batch
Compute Batch
Submit for Review

You will not be able to make changes to this dataset while it is in review.

Publish Dataset

Are you sure you want to republish this dataset?

Select if this is a minor or major version update.

Publish Dataset

This dataset cannot be published until University of Oslo is published by its administrator.

Publish Dataset

This dataset cannot be published until University of Oslo and DataverseNO are published.

Return to Author

Return this dataset to contributor for modification.

Add/Edit a Version Note
Styled Citation