Supporting Data for: Allochrony in Atlantic lumpfish: genomic and otolith shape divergence between spring and autumn spawners

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Horaud, Mathilde; Raventós, Núria; Præbel, Kim; Galià-Camps, Carles; Pegueroles, Cinta; Carreras, Carlos; Pascual, Marta; Tuset, Victor M; Bhat, Shripathi; Lynghammar, Arve, 2025, "Supporting Data for: Allochrony in Atlantic lumpfish: genomic and otolith shape divergence between spring and autumn spawners", https://doi.org/10.18710/RRWSIR, DataverseNO, V1

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Description	This data set contains two datasets. Firstly, the Single Nucleotide Polymorphism (SNP) genotypes for the Atlantic lumpfish (Cyclopterus lumpus) used in the population genomics study. Samples are collected from fjords around Norway (Sørøya and Namdal). The genotypes are called using whole genome shotgun sequencing approach. Second data is 4th wavelet data for otoliths. From each contour, a total of 512 Cartesian coordinates on each orthogonal projection of the otolith were extracted using the wavelet representation routines developed in MATLAB® language and implemented in the AFORO v-1.1.2 (‘Anàlisi de FORmes d'Otòlits’) web page (http://aforo.cmima.csic.es/index.jsp). The 4th (medium-small detail) wavelet was selected for further analyses, as it is recommended to capture the optimal level of detail for identification of intra-specific populations or morphotypes. (2025-01-31)
Subject	Earth and Environmental Sciences
Keyword	Atlantic lumpfish, population genomics, Single Nucleotide Polymorphism, spawning season, otolith analysis
Related Publication	Horaud, M., Raventós, N., Præbel, K., Galià-Camps, C., Pegueroles, C., Carreras, C., Pascual, M., Tuset, V.M., Bhat, S. and Lynghammar, A. (2025), Allochrony in Atlantic Lumpfish: Genomic and Otolith Shape Divergence Between Spring and Autumn Spawners. Ecol Evol, 15: e70946. https://doi.org/10.1002/ece3.70946 doi: 10.1002/ece3.70946
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	00_README.txt Plain Text - 5.8 KB Published Feb 14, 2025 1 Download MD5: 95a40281f5c3e47324e658e3e7f36ab5 Description of the files uploaded and methods used for the generation of the data	Preview "00_README.txt" Access File File Access Public Download Options Plain Text Download Metadata Data File Citation EndNote XML RIS BibTeX
	01_FALL_SPRING_64indv.recode.vcf text/vcard - 4.1 GB Published Feb 14, 2025 1 Download MD5: 854e1c3394f222b80eb211b39082cc6b SNP genotype file	Access File File Access Public Download Options text/vcard Download Metadata Data File Citation EndNote XML RIS BibTeX
	02_W4_new_41indv.csv Comma Separated Values - 219.4 KB Published Feb 14, 2025 1 Download MD5: 624eab5c9135c2185d56c57d550c2d47 4th wavelet data of otoliths	Preview "02_W4_new_41indv.csv" Access File File Access Public Download Options Comma Separated Values Download Metadata Data File Citation EndNote XML RIS BibTeX

Citation Metadata

Persistent Identifier	doi:10.18710/RRWSIR
Publication Date	2025-02-14
Title	Supporting Data for: Allochrony in Atlantic lumpfish: genomic and otolith shape divergence between spring and autumn spawners
Author	Horaud, Mathilde (UiT The Arctic University of Norway) - ORCID: https://orcid.org/0009-0005-3369-260X Raventós, Núria (Centre d’Estudis Avançats de Blanes (CEAB-CSIC), Blanes, Spain) - ORCID: https://orcid.org/0000-0002-1831-9947 Præbel, Kim (UiT The Arctic University of Norway) - ORCID: https://orcid.org/0000-0002-0681-1854 Galià-Camps, Carles (Centre d’Estudis Avançats de Blanes (CEAB-CSIC), Blanes, Spain) - ORCID: https://orcid.org/0000-0002-0945-0249 Pegueroles, Cinta (. Department of Genetics, Microbiology and Statistics, University of Barcelona (UB), Barcelona, Spain) - ORCID: https://orcid.org/0000-0003-0701-9866 Carreras, Carlos (Department of Genetics, Microbiology and Statistics, University of Barcelona (UB), Barcelona, Spain) - ORCID: https://orcid.org/0000-0002-2478-6445 Pascual, Marta (Department of Genetics, Microbiology and Statistics, University of Barcelona (UB), Barcelona, Spain) - ORCID: https://orcid.org/0000-0002-6189-0612 Tuset, Victor M (Instituto de Oceanografía y Cambio Global, IOCAG, Universidad de Las Palmas de Gran Canaria, Unidad Asociada ULPGC-CSIC, Campus de Taliarte, 35214 Telde, Gran Canaria, Canary Islands, Spain) - ORCID: https://orcid.org/0000-0001-9032-2844 Bhat, Shripathi (UiT The Arctic University of Norway) - ORCID: https://orcid.org/0000-0001-8389-2216 Lynghammar, Arve (UiT The Arctic University of Norway) - ORCID: https://orcid.org/0000-0002-6827-568X
Point of Contact	Use email button above to contact. Mathilde Horaud (UiT The Arctic University of Norway) Bhat, Shripathi (UiT The Arctic University of Norway)
Description	This data set contains two datasets. Firstly, the Single Nucleotide Polymorphism (SNP) genotypes for the Atlantic lumpfish (Cyclopterus lumpus) used in the population genomics study. Samples are collected from fjords around Norway (Sørøya and Namdal). The genotypes are called using whole genome shotgun sequencing approach. Second data is 4th wavelet data for otoliths. From each contour, a total of 512 Cartesian coordinates on each orthogonal projection of the otolith were extracted using the wavelet representation routines developed in MATLAB® language and implemented in the AFORO v-1.1.2 (‘Anàlisi de FORmes d'Otòlits’) web page (http://aforo.cmima.csic.es/index.jsp). The 4th (medium-small detail) wavelet was selected for further analyses, as it is recommended to capture the optimal level of detail for identification of intra-specific populations or morphotypes. (2025-01-31)
Subject	Earth and Environmental Sciences
Keyword	Atlantic lumpfish (whole genome shotgun sequencing) population genomics Single Nucleotide Polymorphism spawning season otolith analysis
Related Publication	Horaud, M., Raventós, N., Præbel, K., Galià-Camps, C., Pegueroles, C., Carreras, C., Pascual, M., Tuset, V.M., Bhat, S. and Lynghammar, A. (2025), Allochrony in Atlantic Lumpfish: Genomic and Otolith Shape Divergence Between Spring and Autumn Spawners. Ecol Evol, 15: e70946. https://doi.org/10.1002/ece3.70946 doi: 10.1002/ece3.70946 https://doi.org/10.1002/ece3.70946
Language	English
Producer	UiT The Arctic University of Norway (UiT) https://en.uit.no/
Contributor	Data Collector : Horaud, Mathilde Data Manager : Bhat, Shripathi Supervisor : Præbel, Kim Supervisor : Lynghammar, Arve Hosting Institution : EvoGenetics Lab, University of Barcelona Research Group : Ressearch Group for Genetics, UiT The Arctic University of Norway Other : Sørøya Rensefisk AS Other : Namdal Rensefisk AS Other : Sigma2, Norway
Funding Information	UiT-The Arctic University of Norway: PhD Grant NORBIS: PhD Mobility grant
Distributor	UiT The Arctic University of Norway (UiT) https://dataverse.no/dataverse/uit
Depositor	Bhat, Shripathi
Deposit Date	2025-02-01
Date of Collection	Start Date: 2021 ; End Date: 2022
Data Type	SNP genotype data; otolith 4th wavelet data
Software	vcftools, Version: 0.1.16 bcftools, Version: 1.18 AFORO, Version: 1.1.2

Geospatial Metadata

Geographic Coverage	Norway, Troms and Finnmark, Sørøya Norway, Trøndelag, Namdal
Geographic Unit	Spawning grounds of Atlantic Lumpfish
Geographic Bounding Box	10.770750 22.000167 70.661861 64.510167

Life Sciences Metadata

Design Type	Other
Other Design Type	samples are collected from natural environment.
Factor Type	Genetic Characteristics
Other Factor Type	Otolith readings.
Organism	Other
Other Organism	Cyclopterus lumpus
Measurement Type	SNP analysis
Other Measurement Type	4th Wavelet values for otoliths
Technology Type	nucleotide sequencing; Other
Other Technology Type	Wavelet analysis
Technology Platform	Illumina

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