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File Type: Archive

2,831 to 2,840 of 3,469 Results

GSE105018.data.Rdata Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions" Gzip Archive - 5.0 GB - MD5: fa05d2ac06de7cb282a47b1830319f70 An R data file containing the following objects: 1. geo.ranges: a GRanges object containing beta values for 430802 CpGs across 1658 samples from GSE105018 Illumina HumanMethylation 450 data set (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE105018). 2. sample.info: a list...
GSE51032.data.Rdata Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions" Gzip Archive - 2.9 GB - MD5: 3bca6c45a39974282b261a4e1d69c88a An R data file containing the following objects: 1. geo.ranges: a GRanges object containing beta values for 485512 CpGs across 845 samples from GSE51032 Illumina HumanMethylation 450 data set (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE51032). This data set was used as...
mouse.embryonic.marks.tar.gz Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions" Gzip Archive - 1.8 GB - MD5: 1915579eadd2cc76a9c2de09273a3279 LOLA database containing information on mouse embryonic chromatin marks. Required for R/PoC.results.GSE105018.R. Ungzip before using.
results-5-1000.Rdata Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions" Gzip Archive - 72.0 KB - MD5: 1bae7f83d47c2121aa626923d02a77cf An R data file with all the performance metrics obtained by R/PoC.results.SIMULATED.R.
SIMULATED-5-1000-0.025.data.Rdata Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions" Gzip Archive - 351.9 MB - MD5: ee3bd504f36ffe850383a5d488bb6a95 An R data file containing the following objects: 1. simulated.ranges: a GRanges object containing simulated beta values for 485512 CpGs across 100 samples with aberrant methylation events introduced in some of the regions. 2. modified.regions.unique: a GRanges object containing g...
SIMULATED-5-1000-0.050.data.Rdata Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions" Gzip Archive - 351.9 MB - MD5: 7f2d709785f68949cad639b577545039 An R data file which is similar to "data∕SIMULATED/SIMULATED-5-1000-0.025.data.Rdata", but was generated using "delta=0.050"
SIMULATED-5-1000-0.100.data.Rdata Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions" Gzip Archive - 351.9 MB - MD5: bdfff1e851824f8481e6e85ef616fa18 An R data file which is similar to "data∕SIMULATED/SIMULATED-5-1000-0.025.data.Rdata", but was generated using "delta=0.100"
SIMULATED-5-1000-0.250.data.Rdata Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions" Gzip Archive - 351.8 MB - MD5: 491f986c04f2e3f0404e94502a2cae67 An R data file which is similar to "data∕SIMULATED/SIMULATED-5-1000-0.025.data.Rdata", but was generated using "delta=0.250"
SIMULATED-5-1000-0.500.data.Rdata Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions" Gzip Archive - 351.8 MB - MD5: 9c77b6926d9f5471894b8e6e290583b4 An R data file which is similar to "data∕SIMULATED/SIMULATED-5-1000-0.025.data.Rdata", but was generated using "delta=0.500"
tcga.coad.AMRs.Rdata Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions" Gzip Archive - 188.6 MB - MD5: b07cf6d556a8cb446028d58fca583ca8 An R data file containing the following objects: 1. tcga.coad.ranges: GRanges object with TCGA-COAD subset of methylation beta values for adjacent and tumour tissue pairs. 2. tcga.coad.ramr.hg19: GRanges object with aberrantly methylated regions found in adjacent TCGA-COAD tissue...

GSE105018.data.Rdata

Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions"

Gzip Archive - 5.0 GB -

An R data file containing the following objects: 1. geo.ranges: a GRanges object containing beta values for 430802 CpGs across 1658 samples from GSE105018 Illumina HumanMethylation 450 data set (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE105018). 2. sample.info: a list...

GSE51032.data.Rdata

Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions"

Gzip Archive - 2.9 GB -

An R data file containing the following objects: 1. geo.ranges: a GRanges object containing beta values for 485512 CpGs across 845 samples from GSE51032 Illumina HumanMethylation 450 data set (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE51032). This data set was used as...

mouse.embryonic.marks.tar.gz

Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions"

Gzip Archive - 1.8 GB -

LOLA database containing information on mouse embryonic chromatin marks. Required for R/PoC.results.GSE105018.R. Ungzip before using.

results-5-1000.Rdata

Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions"

Gzip Archive - 72.0 KB -

An R data file with all the performance metrics obtained by R/PoC.results.SIMULATED.R.

SIMULATED-5-1000-0.025.data.Rdata

Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions"

Gzip Archive - 351.9 MB -

An R data file containing the following objects: 1. simulated.ranges: a GRanges object containing simulated beta values for 485512 CpGs across 100 samples with aberrant methylation events introduced in some of the regions. 2. modified.regions.unique: a GRanges object containing g...

SIMULATED-5-1000-0.050.data.Rdata

Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions"

Gzip Archive - 351.9 MB -

An R data file which is similar to "data∕SIMULATED/SIMULATED-5-1000-0.025.data.Rdata", but was generated using "delta=0.050"

SIMULATED-5-1000-0.100.data.Rdata

Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions"

Gzip Archive - 351.9 MB -

An R data file which is similar to "data∕SIMULATED/SIMULATED-5-1000-0.025.data.Rdata", but was generated using "delta=0.100"

SIMULATED-5-1000-0.250.data.Rdata

Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions"

Gzip Archive - 351.8 MB -

An R data file which is similar to "data∕SIMULATED/SIMULATED-5-1000-0.025.data.Rdata", but was generated using "delta=0.250"

SIMULATED-5-1000-0.500.data.Rdata

Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions"

Gzip Archive - 351.8 MB -

An R data file which is similar to "data∕SIMULATED/SIMULATED-5-1000-0.025.data.Rdata", but was generated using "delta=0.500"

tcga.coad.AMRs.Rdata

Nov 30, 2020 - Replication Data for: "ramr: an R package for detection of rare aberrantly methylated regions"

Gzip Archive - 188.6 MB -

An R data file containing the following objects: 1. tcga.coad.ranges: GRanges object with TCGA-COAD subset of methylation beta values for adjacent and tumour tissue pairs. 2. tcga.coad.ramr.hg19: GRanges object with aberrantly methylated regions found in adjacent TCGA-COAD tissue...

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