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Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Apr 7, 2026 - UiT The Arctic University of Norway Pettersen, Jakob Peder, 2026, "Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq", https://doi.org/10.18710/EGMHAC, DataverseNO, V1 In the paper Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq , two secondary analysis bioinformatic pipelines for data from the PETRI-seq protocol (Blattman et al. 2020) are compared and benchmarked. One of these pipelines is the original PETRI-seq pipeline (Blattman et al. 2020 and Blattman et al. 2024, available a...
00_Readme.txt Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Plain Text - 12.0 KB - MD5: 44476222713cefdb26417034c8b5cd7f Documentation README file generated by DataverseUrge. This README documents the purpose and structure of the repository.
comparison.pdf Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Adobe PDF - 9.0 KB - MD5: 0b3c066bf493ebd535b2ab90c2c9941c Figure used in the paper Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq, produced by running numeric_comparison.R
config.yaml Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Unknown - 368 B - MD5: 33412d92323d5198067725cbbb287e70 Config file which Petrisnake used for the benchmarking
numeric_comparison.R Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq R Syntax - 3.7 KB - MD5: c2a3edd4913fd218b44a3e6c3a7e1057 R script to produce the figure numeric_comparison.R from the data in the repository
pipeline_comparison_figures.Rproj Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Unknown - 205 B - MD5: c7331378404856f9d850f3cd356e0ac3 RStudio project file with predefined settings for code style
renv.lock Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Unknown - 356.7 KB - MD5: 7f2051f46b158ca6ba8494346c6315bf renv enviroment file used to reproduce the R environmentment to run numeric_comparision
benchmark_timing.log Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Plain Text - 788 B - MD5: 2202488de59ec07d6f0a89a5a48b4e36
EC_3h_deep_bc1_cumulative_frequency_table.txt Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Plain Text - 67.9 MB - MD5: 70d8a6084852810e55047edd621794ed
EC_3h_deep_bc1_kneePlot.eps Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Postscript - 563.6 KB - MD5: 9c3d877c4fc0ae340462eea9e7fee751

Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq

Apr 7, 2026 - UiT The Arctic University of Norway

Pettersen, Jakob Peder, 2026, "Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq", https://doi.org/10.18710/EGMHAC, DataverseNO, V1

In the paper Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq , two secondary analysis bioinformatic pipelines for data from the PETRI-seq protocol (Blattman et al. 2020) are compared and benchmarked. One of these pipelines is the original PETRI-seq pipeline (Blattman et al. 2020 and Blattman et al. 2024, available a...

00_Readme.txt

Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq

Plain Text - 12.0 KB -

Documentation

README file generated by DataverseUrge. This README documents the purpose and structure of the repository.

comparison.pdf

Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq

Adobe PDF - 9.0 KB -

Figure used in the paper Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq, produced by running numeric_comparison.R

config.yaml

Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq

Unknown - 368 B -