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2_ESI_Feedstock_Case_Study.zip Apr 22, 2026 - Supplementary data for: A systems thinking governance framework for large-scale sustainability synthesis ZIP Archive - 182.6 KB - MD5: 45b7f300f0966fcd727067a3f94beefe This folder contains NEW computational transparency materials for the EcoStrategic Index (ESI) feedstock evidence-mapping case study. While the case study was previously documented in narrative form (Table S2 in the main paper), this folder now provides complete calculation workbooks, raw data, methodology documentation, and reproducible formulas d...
Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Apr 7, 2026 - UiT The Arctic University of Norway Pettersen, Jakob Peder, 2026, "Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq", https://doi.org/10.18710/EGMHAC, DataverseNO, V1 In the paper Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq , two secondary analysis bioinformatic pipelines for data from the PETRI-seq protocol (Blattman et al. 2020) are compared and benchmarked. One of these pipelines is the original PETRI-seq pipeline (Blattman et al. 2020 and Blattman et al. 2024, available a...
00_Readme.txt Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Plain Text - 12.0 KB - MD5: 44476222713cefdb26417034c8b5cd7f Documentation README file generated by DataverseUrge. This README documents the purpose and structure of the repository.
comparison.pdf Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Adobe PDF - 9.0 KB - MD5: 0b3c066bf493ebd535b2ab90c2c9941c Figure used in the paper Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq, produced by running numeric_comparison.R
config.yaml Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Unknown - 368 B - MD5: 33412d92323d5198067725cbbb287e70 Config file which Petrisnake used for the benchmarking
numeric_comparison.R Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq R Syntax - 3.7 KB - MD5: c2a3edd4913fd218b44a3e6c3a7e1057 R script to produce the figure numeric_comparison.R from the data in the repository
pipeline_comparison_figures.Rproj Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Unknown - 205 B - MD5: c7331378404856f9d850f3cd356e0ac3 RStudio project file with predefined settings for code style
renv.lock Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Unknown - 356.7 KB - MD5: 7f2051f46b158ca6ba8494346c6315bf renv enviroment file used to reproduce the R environmentment to run numeric_comparision
benchmark_timing.log Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Plain Text - 788 B - MD5: 2202488de59ec07d6f0a89a5a48b4e36
EC_3h_deep_bc1_cumulative_frequency_table.txt Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Plain Text - 67.9 MB - MD5: 70d8a6084852810e55047edd621794ed

2_ESI_Feedstock_Case_Study.zip

Apr 22, 2026 - Supplementary data for: A systems thinking governance framework for large-scale sustainability synthesis

ZIP Archive - 182.6 KB -

This folder contains NEW computational transparency materials for the EcoStrategic Index (ESI) feedstock evidence-mapping case study. While the case study was previously documented in narrative form (Table S2 in the main paper), this folder now provides complete calculation workbooks, raw data, methodology documentation, and reproducible formulas d...

Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq

Apr 7, 2026 - UiT The Arctic University of Norway

Pettersen, Jakob Peder, 2026, "Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq", https://doi.org/10.18710/EGMHAC, DataverseNO, V1

In the paper Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq , two secondary analysis bioinformatic pipelines for data from the PETRI-seq protocol (Blattman et al. 2020) are compared and benchmarked. One of these pipelines is the original PETRI-seq pipeline (Blattman et al. 2020 and Blattman et al. 2024, available a...

00_Readme.txt

Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq

Plain Text - 12.0 KB -

Documentation

README file generated by DataverseUrge. This README documents the purpose and structure of the repository.

comparison.pdf

Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq

Adobe PDF - 9.0 KB -

Figure used in the paper Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq, produced by running numeric_comparison.R

config.yaml

Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq

Unknown - 368 B -