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2,321 to 2,330 of 12,879 Results
minfi.array.data.Rdata
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
R Data - 56.0 MB - MD5: 365ba0fbc3d6491677cb890502c56cbb
An R data file containing the following objects: 1. array.ranges: a GRanges object containing beta values for 865859 CpGs across 8 samples from GSE201689 Illumina HumanMethylationEPIC data set (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE201689). 2. array.ids:...
race.R
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
R Syntax - 1.8 KB - MD5: f5b6b82e519826d812a32b75ea856d1b
An R script that compares the processing speed of methods on amplicon- and capture-based sequencing data
race-wgbs.R
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
R Syntax - 1.1 KB - MD5: 9493b74f97b6785728130a6dee75b1e9
An R script that compares the processing speed of methods on WGBS data
SamplesTable.txt
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Plain Text - 1.5 KB - MD5: fbff2691fafbfbd27e25a800aa2b37db
Illumina iScan output file. Decription of important columns: 01. Sample ID: short sample identifier 02. Sentrix Barcode: barcode part of the long sample identifier 03. Sample Section: section part of the long sample identifier
simulate.R
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
R Syntax - 4.8 KB - MD5: 773ad0ec1b035819eeb266aad7e9adb4
An R script that simulates sequencing reads
SOLDAT.full-report.tsv
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Tab-Separated Values - 84.6 KB - MD5: ed08473ff19be1732531ff2466d18918
Binary alignment/map file generated using Illumina DRAGEN for the male DNA sample
SOLDAT-HUS-A02-BL01.bam
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Gzip Archive - 63.0 MB - MD5: 42e15a7db503eacaba6f94772b9843b9
Binary alignment/map file generated using Illumina DRAGEN for the male DNA sample
SOLDAT-HUS-A05-BL01.bam
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Gzip Archive - 60.1 MB - MD5: 0076e3ddb709ef1f3f8f9d3c5ac374ce
Binary alignment/map file generated using Illumina DRAGEN for the male DNA sample
SOLDAT-HUS-A22-BL01.bam
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Gzip Archive - 67.1 MB - MD5: 62b907db89f2aa6df99578c4a3e570a7
Binary alignment/map file generated using Illumina DRAGEN for the male DNA sample
SOLDAT-HUS-A26-BL01.bam
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Gzip Archive - 77.3 MB - MD5: d98c2407a1ade0d0b0bad76b9e1800d3
Binary alignment/map file generated using Illumina DRAGEN for the male DNA sample
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