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Publication Year: 2024

51 to 60 of 12,697 Results

BUS24_demagnetisation.csv Dec 12, 2024 - Replication Data for: Reptile footprints on a pelagic seafloor as a vestige of a synsedimentary seismic event in the lower Campanian Scaglia Rossa Basin of the Umbria-Marche Apennines (Italy) Comma Separated Values - 11.7 KB - MD5: 2eb1321f3f5a4b41f92fb96c525abee0 DataDemagnetisationMagnetic remanenceMagnetostratigraphy
BUS24_susc.csv Dec 12, 2024 - Replication Data for: Reptile footprints on a pelagic seafloor as a vestige of a synsedimentary seismic event in the lower Campanian Scaglia Rossa Basin of the Umbria-Marche Apennines (Italy) Comma Separated Values - 13.3 KB - MD5: d2f5d4aa03db43392ecd7fa623ba20a3 DataMagnetic susceptibility
Orientation_parameters.pdf Dec 12, 2024 - Replication Data for: Reptile footprints on a pelagic seafloor as a vestige of a synsedimentary seismic event in the lower Campanian Scaglia Rossa Basin of the Umbria-Marche Apennines (Italy) Adobe PDF - 322.4 KB - MD5: 9a9e0bdabbb2db119c7e73c42291a3cd
00_README.txt Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres) Plain Text - 15.5 KB - MD5: 5a3347a359bafb3bb918c9f8256f846a
01_MicroRNA_Sequencing_Analysis.sh Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres) Shell Script - 15.8 KB - MD5: 22021ee54507706369dc3d6cdbd6aa37 This script outlines a bioinformatics pipeline for processing and analyzing RNA sequencing data of microRNAs (miRNAs) in ruddy turnstones, including quality checks, adapter trimming, read filtering, mapping, feature counting, and differential expression analysis.
02_Coding_Article_Figures.sh Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres) Shell Script - 11.8 KB - MD5: 8bbcdacd6282b43e7fb84f2b334ced7a This file contains the scripts used for generating the manuscript figures.
03_ain_miRNAome.fasta Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres) Unknown - 11.1 KB - MD5: e2e6979324cad6a6a36b9f6db2da5186 This file contains mature microRNA (miRNA) sequences from ruddy turnstones (Arenaria interpres). Each sequence represents a different miRNA arm, either the 3' or 5' arm, and is associated with a specific miRNA family. The file is formatted in FASTA, where each sequence is preceded by a header line starting with >, followed by a description or ident...
04_Fastqc_Sequence_Length_Distribution_Plot.tsv Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres) Tab-Separated Values - 950 B - MD5: e22ffa9f0bd5b201e7f44fc47236a1fd This file, extracted from the MultiQC report, summarizes the sequence length distribution of the clean small RNA-seq reads for each sample after FastQC quality assessment. This file was used to generate Figure 2 of the manuscript, which visually presents the distribution of read lengths (18-25 nt) across all the samples.
05_FeatureCounts.tsv Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres) Tab-Separated Values - 16.2 KB - MD5: 40b85de1570e294e23c1fdbc684693ab This file, generated from the featureCounts function, contains miRNA counts, derived from a set of BAM files. The file provides raw counts for each miRNA feature, with each row corresponding to a unique miRNA ID, and each column representing a sample.
06_eff.RTS.csv Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres) Comma Separated Values - 126 B - MD5: 71effd58adb72e5422c6fa53645795e2 This file contains amplification efficiencies for each miRNA target. These efficiencies, which represent the amplification factor per PCR cycle, are essential for accurate data normalization in qPCR analysis.

BUS24_demagnetisation.csv

Dec 12, 2024 - Replication Data for: Reptile footprints on a pelagic seafloor as a vestige of a synsedimentary seismic event in the lower Campanian Scaglia Rossa Basin of the Umbria-Marche Apennines (Italy)

Comma Separated Values - 11.7 KB -

DataDemagnetisationMagnetic remanenceMagnetostratigraphy

BUS24_susc.csv

Comma Separated Values - 13.3 KB -

DataMagnetic susceptibility

Orientation_parameters.pdf

Adobe PDF - 322.4 KB -

00_README.txt

Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres)

Plain Text - 15.5 KB -

01_MicroRNA_Sequencing_Analysis.sh

Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres)

Shell Script - 15.8 KB -

This script outlines a bioinformatics pipeline for processing and analyzing RNA sequencing data of microRNAs (miRNAs) in ruddy turnstones, including quality checks, adapter trimming, read filtering, mapping, feature counting, and differential expression analysis.

02_Coding_Article_Figures.sh

Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres)

Shell Script - 11.8 KB -

This file contains the scripts used for generating the manuscript figures.

03_ain_miRNAome.fasta

Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres)

Unknown - 11.1 KB -

This file contains mature microRNA (miRNA) sequences from ruddy turnstones (Arenaria interpres). Each sequence represents a different miRNA arm, either the 3' or 5' arm, and is associated with a specific miRNA family. The file is formatted in FASTA, where each sequence is preceded by a header line starting with >, followed by a description or ident...

04_Fastqc_Sequence_Length_Distribution_Plot.tsv

Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres)

Tab-Separated Values - 950 B -

This file, extracted from the MultiQC report, summarizes the sequence length distribution of the clean small RNA-seq reads for each sample after FastQC quality assessment. This file was used to generate Figure 2 of the manuscript, which visually presents the distribution of read lengths (18-25 nt) across all the samples.

05_FeatureCounts.tsv

Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres)

Tab-Separated Values - 16.2 KB -

This file, generated from the featureCounts function, contains miRNA counts, derived from a set of BAM files. The file provides raw counts for each miRNA feature, with each row corresponding to a unique miRNA ID, and each column representing a sample.

06_eff.RTS.csv

Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres)

Comma Separated Values - 126 B -

This file contains amplification efficiencies for each miRNA target. These efficiencies, which represent the amplification factor per PCR cycle, are essential for accurate data normalization in qPCR analysis.

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