Featured Dataverses

In order to use this feature you must have at least one published or linked dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

Advanced Search

2,411 to 2,420 of 103,722 Results
hg19ToHg38.over.chain
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Unknown - 592.6 KB - MD5: 9267c9fef79b54962da8efadd0ddf6b6
Human hg19 to human hg38 liftover chain.
idat2beta.R
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
R Syntax - 2.5 KB - MD5: cca6332491fe3c5b0203eff3c5c2ccf8
An R script that processes GSE201689 data
manuscript-diagram-comparison.R
Jan 16, 2023 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
R Source Code - 65.3 KB - MD5: 1054cae3652e1fff978db455012eb87d
An R script that generates figures and tables for the manuscript
methclone-d500-c1000.tar.xz
Jan 16, 2023 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
XZ Archive - 166.3 KB - MD5: 26e8ce2358222d3d18b74c76c6d61189
An archive file containing methclone output files for the pairs of male DNA samples
minfi.array.data.Rdata
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
R Data - 56.0 MB - MD5: 365ba0fbc3d6491677cb890502c56cbb
An R data file containing the following objects: 1. array.ranges: a GRanges object containing beta values for 865859 CpGs across 8 samples from GSE201689 Illumina HumanMethylationEPIC data set (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE201689). 2. array.ids: a character vector of sample IDs.
race.R
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
R Syntax - 1.8 KB - MD5: f5b6b82e519826d812a32b75ea856d1b
An R script that compares the processing speed of methods on amplicon- and capture-based sequencing data
race-wgbs.R
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
R Syntax - 1.1 KB - MD5: 9493b74f97b6785728130a6dee75b1e9
An R script that compares the processing speed of methods on WGBS data
SamplesTable.txt
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Plain Text - 1.5 KB - MD5: fbff2691fafbfbd27e25a800aa2b37db
Illumina iScan output file. Decription of important columns: 01. Sample ID: short sample identifier 02. Sentrix Barcode: barcode part of the long sample identifier 03. Sample Section: section part of the long sample identifier
simulate.R
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
R Syntax - 4.8 KB - MD5: 773ad0ec1b035819eeb266aad7e9adb4
An R script that simulates sequencing reads
SOLDAT.full-report.tsv
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Tab-Separated Values - 84.6 KB - MD5: ed08473ff19be1732531ff2466d18918
Binary alignment/map file generated using Illumina DRAGEN for the male DNA sample
Add Data

Log in to create a dataverse or add a dataset.

Log In
Share Dataverse

Share this dataverse on your favorite social media networks.

Link Dataverse
Reset Modifications

Are you sure you want to reset the selected metadata fields? If you do this, any customizations (hidden, required, optional) you have done will no longer appear.