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2,411 to 2,420 of 103,544 Results
methclone-d500-c1000.tar.xz
Jan 16, 2023 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
XZ Archive - 166.3 KB - MD5: 26e8ce2358222d3d18b74c76c6d61189
An archive file containing methclone output files for the pairs of male DNA samples
minfi.array.data.Rdata
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
R Data - 56.0 MB - MD5: 365ba0fbc3d6491677cb890502c56cbb
An R data file containing the following objects: 1. array.ranges: a GRanges object containing beta values for 865859 CpGs across 8 samples from GSE201689 Illumina HumanMethylationEPIC data set (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE201689). 2. array.ids: a character vector of sample IDs.
race.R
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
R Syntax - 1.8 KB - MD5: f5b6b82e519826d812a32b75ea856d1b
An R script that compares the processing speed of methods on amplicon- and capture-based sequencing data
race-wgbs.R
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
R Syntax - 1.1 KB - MD5: 9493b74f97b6785728130a6dee75b1e9
An R script that compares the processing speed of methods on WGBS data
SamplesTable.txt
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Plain Text - 1.5 KB - MD5: fbff2691fafbfbd27e25a800aa2b37db
Illumina iScan output file. Decription of important columns: 01. Sample ID: short sample identifier 02. Sentrix Barcode: barcode part of the long sample identifier 03. Sample Section: section part of the long sample identifier
simulate.R
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
R Syntax - 4.8 KB - MD5: 773ad0ec1b035819eeb266aad7e9adb4
An R script that simulates sequencing reads
SOLDAT.full-report.tsv
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Tab-Separated Values - 84.6 KB - MD5: ed08473ff19be1732531ff2466d18918
Binary alignment/map file generated using Illumina DRAGEN for the male DNA sample
SOLDAT-HUS-A01-BL01.bam
Jan 16, 2023 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Gzip Archive - 59.7 MB - MD5: 69ffe36f684d51e77779dbe516b8da9d
Binary alignment/map file generated using Illumina DRAGEN for the male DNA sample A01
SOLDAT-HUS-A02-BL01.bam
May 5, 2022 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Gzip Archive - 63.0 MB - MD5: 42e15a7db503eacaba6f94772b9843b9
Binary alignment/map file generated using Illumina DRAGEN for the male DNA sample
SOLDAT-HUS-A03-BL01.bam
Jan 16, 2023 - Replication Data for: "epialleleR: an R/BioC package for quantifying and analysing low-frequency DNA methylation"
Gzip Archive - 54.1 MB - MD5: 51c0acad265cfd41a0ebead5893ddb20
Binary alignment/map file generated using Illumina DRAGEN for the male DNA sample A03
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