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61 to 70 of 2,037 Results

Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Feb 10, 2025 Valencia-Pesqueira, Laura Marian; Hoff, Siv Nam Khang; Tørresen, Ole Kristian; Jentoft, Sissel; Lefevre, Sjannie, 2025, "Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius", https://doi.org/10.18710/GXMSUH, DataverseNO, V2 This dataset contains the annotated version of the crucian carp (Carassius carassius) genome, including the annotation and other associated files. The full genome assembly (290 sequences) is available under NCBI Bioproject PRJNA1119394, together with the raw sequence data used fo...
00_README.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 9.4 KB - MD5: 510012e1edc19f3d637fa9c18e7c1d7d This file include basic information about the deposited files and methods used to obtain them.
04c_ccar_annotation_v5_swissprot_wGO_outfmt6.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 5.3 MB - MD5: 90654cd2c0e37c6ae591ba1ad6cee3b8 This is the blast output.
04d_ccar_annotation_v5_swissprot_hits_and_GO_v2.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 22.6 MB - MD5: 4d9cb0f41068006b862439ce3a7fd7ea This file contains protein products for hits in the Uniprot Swissprot database (release 2024_06, 27-Nov-2024), including Uniprot entry and symbol, product name, and gene ontology (GO) terms where these are available.
01a_ccar_genome_v1_262scaffolds_fasta.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 1.6 GB - MD5: 084a69b6ff9f9d9e57ec0d58c1ccd6b7 This is the unmasked version of the filtered genome (262 scaffolds) used in some steps of the annotation (see article for details).
01b_ccar_genome_v1_262scaffolds_sm_fasta.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 1.6 GB - MD5: 3055c321971811144243b5d91b3998dd Datagenome This is the soft-masked version of the genome used in some steps of the annotation pipeline (see article for details). The genome was soft-masked using Repeatmodeler.
02a_ccar_genome_v1_262scaffolds_trna_gff3.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 2.6 MB - MD5: e1ff55cd7f6075ef495e208664c34d5c This file contains the transfer RNAs (tRNAs) predicted by the tool tRNAScan-SE.
02b_ccar_genome_v1_262scaffolds_rrna_gff3.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 1.6 MB - MD5: 47ca43fd1ed2cf989f2bbfa340f19723 This file contains annotations of ribosomal RNAs predicted by RNAammer.
02c_ccar_isoseq_hq_transcripts_fasta.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 646.7 MB - MD5: ffedfa19d89406f2305beae31e83a54b
02d_ccar_annotation_v5_gff3.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 212.8 MB - MD5: 54423b6fc680239a4171338b33a6f4f1

Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Feb 10, 2025

Valencia-Pesqueira, Laura Marian; Hoff, Siv Nam Khang; Tørresen, Ole Kristian; Jentoft, Sissel; Lefevre, Sjannie, 2025, "Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius", https://doi.org/10.18710/GXMSUH, DataverseNO, V2

This dataset contains the annotated version of the crucian carp (Carassius carassius) genome, including the annotation and other associated files. The full genome assembly (290 sequences) is available under NCBI Bioproject PRJNA1119394, together with the raw sequence data used fo...

00_README.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 9.4 KB -

This file include basic information about the deposited files and methods used to obtain them.

04c_ccar_annotation_v5_swissprot_wGO_outfmt6.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 5.3 MB -

This is the blast output.

04d_ccar_annotation_v5_swissprot_hits_and_GO_v2.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 22.6 MB -

This file contains protein products for hits in the Uniprot Swissprot database (release 2024_06, 27-Nov-2024), including Uniprot entry and symbol, product name, and gene ontology (GO) terms where these are available.

01a_ccar_genome_v1_262scaffolds_fasta.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 1.6 GB -

This is the unmasked version of the filtered genome (262 scaffolds) used in some steps of the annotation (see article for details).

01b_ccar_genome_v1_262scaffolds_sm_fasta.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 1.6 GB -

Datagenome

This is the soft-masked version of the genome used in some steps of the annotation pipeline (see article for details). The genome was soft-masked using Repeatmodeler.

02a_ccar_genome_v1_262scaffolds_trna_gff3.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 2.6 MB -

This file contains the transfer RNAs (tRNAs) predicted by the tool tRNAScan-SE.

02b_ccar_genome_v1_262scaffolds_rrna_gff3.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 1.6 MB -

This file contains annotations of ribosomal RNAs predicted by RNAammer.

02c_ccar_isoseq_hq_transcripts_fasta.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 646.7 MB -

02d_ccar_annotation_v5_gff3.txt