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71 to 80 of 2,037 Results

03a_ccar_annotation_v5_proteins_fasta.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 55.7 MB - MD5: 2685ca29c2c6ab6e4843b20eec9ffe59 This is the predicted amino acid sequences from the genome (262 scaffolds) in fasta format. The sequences were extracted using the AGAT script "agat_sp_extract_sequences.pl" in Anaconda3 (2022.10 on Saga).
03b_ccar_annotation_v5_transcripts_fasta.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 228.7 MB - MD5: e3981b08eeb941b6770b6d8e592b8612 This is the predicted transcript sequences from the genome (262 scaffolds) in fasta format. The sequences were extracted using the AGAT script "agat_sp_extract_sequences.pl" in Anaconda3 (2022.10 on Saga).
04a_ccar_annotation_v5_kegg.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 5.3 MB - MD5: c544d1acf5320b0b9a4180c91e07d31f This file contains the output of the search for KEGG ortholog (KO) matches in the KEGG Ortholog database, found using the tool BlastKOALA (v. 3; https://www.kegg.jp/blastkoala/).
04b_ccar_annotation_v5_interproscan.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 245.2 MB - MD5: 44c621da5dce702d556d1324ce651cfc This is the output from the search run using InterProScan (5.62-94.0-foss-2022a on Saga) against the following databases (version): FunFam (4.3.0), SFLD (4), PANTHER (17.0), Gene3D (4.3.0), Hamap (2023_01), PRINTS (42.0), ProSiteProfiles (2022_05), Coils (2.2.1), SUPERFAMILY (1.7...
05_ccar_genome_v1_scaffold_107_mito_NCBI.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 3.2 KB - MD5: ede1f0b01f51653c8723e8656e6aaa5c This file contain the mitochondrial genome annotation in NCBI format. The annotation was made using the tool MitoAnnotator (
Supporting data for: Postglacial history of a widespread forest fungus in Europe suggests migration out of multiple refugia followed by admixture Jan 29, 2025 Lu, Dabao Sun, 2025, "Supporting data for: Postglacial history of a widespread forest fungus in Europe suggests migration out of multiple refugia followed by admixture", https://doi.org/10.18710/E9Y4MU, DataverseNO, V1 While postglacial migration patterns have been well-studied in plants and animals in Europe, the same is not true for microorganisms such as fungi, and it remains unclear whether fungi have followed the same postglacial migration trajectories. Our main aim in this study was to tr...
00_README_file_v_2_4.txt Jan 29, 2025 - Supporting data for: Postglacial history of a widespread forest fungus in Europe suggests migration out of multiple refugia followed by admixture Plain Text - 9.8 KB - MD5: 223478ddbb1828644e25446ef58e62a3 Readme file
Euro_all_noindel_nodik_noTF_miss20_biallelic.vcf.gz Jan 29, 2025 - Supporting data for: Postglacial history of a widespread forest fungus in Europe suggests migration out of multiple refugia followed by admixture Gzip Archive - 587.8 MB - MD5: 56593db54711cf0427847e874c20cc16 dataset3
Euro_all_noindel_nodik_noTF_miss20_nomono_biallelic_maf0.05_LDpruned.vcf Jan 29, 2025 - Supporting data for: Postglacial history of a widespread forest fungus in Europe suggests migration out of multiple refugia followed by admixture text/vcard - 212.0 MB - MD5: fddc1078768b1e39ed00f6d4f9852b61 dataset2
Euro_all_noindel_nodik_noTF_miss20_noSiberia_nomono_biallelic.vcf Jan 29, 2025 - Supporting data for: Postglacial history of a widespread forest fungus in Europe suggests migration out of multiple refugia followed by admixture text/vcard - 3.0 GB - MD5: 50ac08d4f9b03abcb04a31d7a6f2e379 dataset1

03a_ccar_annotation_v5_proteins_fasta.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 55.7 MB -

This is the predicted amino acid sequences from the genome (262 scaffolds) in fasta format. The sequences were extracted using the AGAT script "agat_sp_extract_sequences.pl" in Anaconda3 (2022.10 on Saga).

03b_ccar_annotation_v5_transcripts_fasta.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 228.7 MB -

This is the predicted transcript sequences from the genome (262 scaffolds) in fasta format. The sequences were extracted using the AGAT script "agat_sp_extract_sequences.pl" in Anaconda3 (2022.10 on Saga).

04a_ccar_annotation_v5_kegg.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 5.3 MB -

This file contains the output of the search for KEGG ortholog (KO) matches in the KEGG Ortholog database, found using the tool BlastKOALA (v. 3; https://www.kegg.jp/blastkoala/).

04b_ccar_annotation_v5_interproscan.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 245.2 MB -

This is the output from the search run using InterProScan (5.62-94.0-foss-2022a on Saga) against the following databases (version): FunFam (4.3.0), SFLD (4), PANTHER (17.0), Gene3D (4.3.0), Hamap (2023_01), PRINTS (42.0), ProSiteProfiles (2022_05), Coils (2.2.1), SUPERFAMILY (1.7...

05_ccar_genome_v1_scaffold_107_mito_NCBI.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 3.2 KB -

This file contain the mitochondrial genome annotation in NCBI format. The annotation was made using the tool MitoAnnotator (

Supporting data for: Postglacial history of a widespread forest fungus in Europe suggests migration out of multiple refugia followed by admixture

Jan 29, 2025

Lu, Dabao Sun, 2025, "Supporting data for: Postglacial history of a widespread forest fungus in Europe suggests migration out of multiple refugia followed by admixture", https://doi.org/10.18710/E9Y4MU, DataverseNO, V1

While postglacial migration patterns have been well-studied in plants and animals in Europe, the same is not true for microorganisms such as fungi, and it remains unclear whether fungi have followed the same postglacial migration trajectories. Our main aim in this study was to tr...

00_README_file_v_2_4.txt

Jan 29, 2025 - Supporting data for: Postglacial history of a widespread forest fungus in Europe suggests migration out of multiple refugia followed by admixture

Plain Text - 9.8 KB -

Readme file

Euro_all_noindel_nodik_noTF_miss20_biallelic.vcf.gz

Jan 29, 2025 - Supporting data for: Postglacial history of a widespread forest fungus in Europe suggests migration out of multiple refugia followed by admixture

Gzip Archive - 587.8 MB -

dataset3

Euro_all_noindel_nodik_noTF_miss20_nomono_biallelic_maf0.05_LDpruned.vcf

Jan 29, 2025 - Supporting data for: Postglacial history of a widespread forest fungus in Europe suggests migration out of multiple refugia followed by admixture

text/vcard - 212.0 MB -

dataset2