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Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Sep 15, 2025
Winklhofer, Magdalena; Nilsson, Göran E.; Lefevre, Sjannie, 2025, "Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation", https://doi.org/10.18710/1EIOVF, DataverseNO, V1
The dataset contains the supplementary material that was created to identify and investigate long non-coding RNA (lncRNA) in the whole brain tissues of crucian carp (Carassius carassius), i.e. the annotation of lncRNAs with the four algorithms (FEELnc, CNCI, CPAT and CPC2), the r...
00_README.txt
Sep 15, 2025 - Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Plain Text - 31.5 KB - MD5: 528b91ae454cad711c46c969f1b60e26
01_Stringtie_cc_transcriptome_all_gtf.txt
Sep 15, 2025 - Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Plain Text - 255.9 MB - MD5: 971dfc938a85433e5dd7ec116b1b6497
02_gffread_cc_transcripts_all_fa.txt
Sep 15, 2025 - Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Plain Text - 572.0 MB - MD5: acbb823cfa496c8923b1029760485ef4
03_feelnc_candidate_lncRNA_all.gtf_RF.txt
Sep 15, 2025 - Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Plain Text - 5.8 MB - MD5: 830e6643e84a347890ed6020d9e069b0
04_CNCI_output_lncRNA_index.txt
Sep 15, 2025 - Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Plain Text - 6.5 MB - MD5: e679908c9166514e155b8e02a6d8d0c8
05_CPAT_output_lncRNA_sense_ORF1.ORF_prob_tsv.txt
Sep 15, 2025 - Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Plain Text - 12.0 MB - MD5: 3872b7c4a2568f5810925ba5997d0d02
06_CPC2_output_lncRNA_codpot_all.txt
Sep 15, 2025 - Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Plain Text - 10.8 MB - MD5: bfc39262178f7d3a27e204c6b91c3824
07_DEG_Normoxia to Anoxia_lncrna_csv.txt
Sep 15, 2025 - Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Plain Text - 469.6 KB - MD5: 443dd561b30fcfe1d40dbe07620da517
08_DEG_Normoxia to Reoxygenation_lncrna_csv.txt
Sep 15, 2025 - Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Plain Text - 420.6 KB - MD5: 1a560b3d5ed349ea220ce8ec73e8f7d1
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