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Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Oct 6, 2025
Winklhofer, Magdalena; Nilsson, Göran E.; Lefevre, Sjannie, 2025, "Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation", https://doi.org/10.18710/1EIOVF, DataverseNO, V2
The dataset contains the supplementary material that was created to identify and investigate long non-coding RNA (lncRNA) in the whole brain tissues of crucian carp (Carassius carassius), i.e. the annotation of lncRNAs with the four algorithms (FEELnc, CNCI, CPAT and CPC2), the r...
00_README.txt
Oct 6, 2025 - Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Plain Text - 46.4 KB - MD5: f14eab473533997f872c4c18ca0f7ea4
01_Stringtie_cc_transcriptome_merged_gtf.txt
Oct 6, 2025 - Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Plain Text - 291.3 MB - MD5: 7adf79af0dddd1480e0f6a763214cd55
02_gffread_cc_transcripts_all_fa.txt
Oct 6, 2025 - Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Plain Text - 649.7 MB - MD5: e4cbc6a918f3b9131d494023dba80560
03_CPAT_output_lncRNA_sense_ORF1.ORF_prob_tsv.txt
Oct 6, 2025 - Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Plain Text - 11.6 MB - MD5: 3e88cc402bdce7c3f781d2f5c485ec93
04_CNCI_output_lncRNA_index.txt
Oct 6, 2025 - Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Plain Text - 6.6 MB - MD5: 7d700b3808b55f90813fcfbfb020c539
05_CPC2_output_lncRNA_codpot.txt
Oct 6, 2025 - Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Plain Text - 10.5 MB - MD5: e6314095b9a51ccc887075d9ba954a50
06_feelnc_candidate_lncRNA.gtf_RF.txt
Oct 6, 2025 - Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Plain Text - 1.4 MB - MD5: f163cef8840a101b161ad4279dd1fa1a
07_common_lncRNA_csv.txt
Oct 6, 2025 - Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Plain Text - 82.2 KB - MD5: 1e495f0d409aabec73445ee771176eec
08_lncRNA_classes.txt
Oct 6, 2025 - Replication Data for: Long Non-Coding RNA Transcripts in Crucian Carp Brain – Annotation and Expression Patterns in Anoxia and Reoxygenation
Plain Text - 3.1 MB - MD5: bf4471b40d29c79f8251107c2a856d6f
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