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2,761 to 2,770 of 3,079 Results

read_me_metadata_raw.txt Sep 24, 2025 - Replication data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate" Plain Text - 2.7 KB - MD5: 147a6b1e5613e0ea7f302cf8d2ec75ed Explanations for metadata_raw.txt variables.
R_script_archies.R Sep 24, 2025 - Replication data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate" R Syntax - 26.4 KB - MD5: 12d5049c63b5e08b096315e36fac383e R script for analyses of the data in this project: Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes
Site_names.txt Sep 24, 2025 - Replication data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate" Plain Text - 576 B - MD5: e7165d2cc7d26146ed9cc900df7e6e66 Full site names for abbreviations in metadata_raw.txt
specindi.txt Sep 24, 2025 - Replication data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate" Plain Text - 63.9 KB - MD5: 98435106f093b3fabbc5c2d6589b6a23 File for R script when doing species indicatior analyses, curated and ready.
zk_meta_data.txt Sep 24, 2025 - Replication data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate" Plain Text - 134.7 KB - MD5: edb969b8069afe0b0dc5476bade2afe3 Metadata zero-skewness transformed for all samples in the study, including sampleId, data, geopgraphic location, vegetation type, bioclimatic variables etc. Descriptions of all metadata in the read_me pane in the Excel file metadata_raw.xlsx
Background data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate" Sep 24, 2025 Thoen, Ella, 2025, "Background data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate"", https://doi.org/10.18710/NCKZD7, DataverseNO, V1 Archaeorhizomycetes is a class of globally widespread soil-dwelling fungi, originally proposed to be associated with plant roots, but their ecology and nutritional mode are not clearly defined. Here, we have sequenced and aligned approximately 2500 bp of the ribosomal DNA from 18S (covering the V4 region), ITS and well into 28S. Sequences have been...
00_README.txt Sep 24, 2025 - Background data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate" Plain Text - 3.4 KB - MD5: 33785d08b1ac333e2c8d6522dda1c6cf Read me file describing the dataset Archaeorhizomycetes alignment and tree 2500 bp long read sequences
Archies_tree.newick Sep 24, 2025 - Background data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate" Unknown - 8.5 KB - MD5: e93a18bd1b2638986d16cf601fbd5dc9 Tree file in .newick format of 120 Archaeorhizomycetes OTUs from Norway
Archies_trimmed_alignment.fasta Sep 24, 2025 - Background data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate" Unknown - 457.2 KB - MD5: 823418450f706701b969d3aee49bb36b Alignment file in .fasta format of 120 Archaeorhizomycetes OTUs from Norway
Replication Data for: Parasite infection shapes the pathobiome and behavior of marine zooplankton Sep 17, 2025 Garvang, Even Sletteng; Heuschele, Jan; Konestabo, Heidi Sjursen; Andersen, Tom; Riemann, Lasse; Titelman, Josefin, 2025, "Replication Data for: Parasite infection shapes the pathobiome and behavior of marine zooplankton", https://doi.org/10.18710/LGZVVT, DataverseNO, V1 Data and scripts for replicating the results in the article `Garvang et al., 2025. Parasite infection shapes the pathobiome and behavior of marine zooplankton. Limnology and Oceanography Letters`. We collected Calanus helgolandicus from the Oslofjord, both healthy individuals and infected with a conspicuous "yellow-hyphal" parasite that changes the...

read_me_metadata_raw.txt

Sep 24, 2025 - Replication data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate"

Plain Text - 2.7 KB -

Explanations for metadata_raw.txt variables.

R_script_archies.R

Sep 24, 2025 - Replication data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate"

R Syntax - 26.4 KB -

R script for analyses of the data in this project: Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes

Site_names.txt

Sep 24, 2025 - Replication data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate"

Plain Text - 576 B -

Full site names for abbreviations in metadata_raw.txt

specindi.txt

Sep 24, 2025 - Replication data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate"

Plain Text - 63.9 KB -

File for R script when doing species indicatior analyses, curated and ready.

zk_meta_data.txt

Sep 24, 2025 - Replication data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate"

Plain Text - 134.7 KB -

Metadata zero-skewness transformed for all samples in the study, including sampleId, data, geopgraphic location, vegetation type, bioclimatic variables etc. Descriptions of all metadata in the read_me pane in the Excel file metadata_raw.xlsx

Background data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate"

Sep 24, 2025

Thoen, Ella, 2025, "Background data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate"", https://doi.org/10.18710/NCKZD7, DataverseNO, V1

Archaeorhizomycetes is a class of globally widespread soil-dwelling fungi, originally proposed to be associated with plant roots, but their ecology and nutritional mode are not clearly defined. Here, we have sequenced and aligned approximately 2500 bp of the ribosomal DNA from 18S (covering the V4 region), ITS and well into 28S. Sequences have been...

00_README.txt

Sep 24, 2025 - Background data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate"

Plain Text - 3.4 KB -

Read me file describing the dataset Archaeorhizomycetes alignment and tree 2500 bp long read sequences

Archies_tree.newick

Sep 24, 2025 - Background data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate"

Unknown - 8.5 KB -

Tree file in .newick format of 120 Archaeorhizomycetes OTUs from Norway

Archies_trimmed_alignment.fasta

Sep 24, 2025 - Background data for "Combined short- and long-read metabarcoding of the soil fungi Archaeorhizomycetes reveals high phylogenetic diversity structured by vegetation and climate"

Unknown - 457.2 KB -

Alignment file in .fasta format of 120 Archaeorhizomycetes OTUs from Norway

Replication Data for: Parasite infection shapes the pathobiome and behavior of marine zooplankton

Sep 17, 2025

Garvang, Even Sletteng; Heuschele, Jan; Konestabo, Heidi Sjursen; Andersen, Tom; Riemann, Lasse; Titelman, Josefin, 2025, "Replication Data for: Parasite infection shapes the pathobiome and behavior of marine zooplankton", https://doi.org/10.18710/LGZVVT, DataverseNO, V1

Data and scripts for replicating the results in the article `Garvang et al., 2025. Parasite infection shapes the pathobiome and behavior of marine zooplankton. Limnology and Oceanography Letters`. We collected Calanus helgolandicus from the Oslofjord, both healthy individuals and infected with a conspicuous "yellow-hyphal" parasite that changes the...

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