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41 to 50 of 2,015 Results

04c_ccar_annotation_v5_swissprot_wGO_outfmt6.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 5.3 MB - MD5: 90654cd2c0e37c6ae591ba1ad6cee3b8 This is the blast output.
04d_ccar_annotation_v5_swissprot_hits_and_GO_v2.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 22.6 MB - MD5: 4d9cb0f41068006b862439ce3a7fd7ea This file contains protein products for hits in the Uniprot Swissprot database (release 2024_06, 27-Nov-2024), including Uniprot entry and symbol, product name, and gene ontology (GO) terms where these are available.
01a_ccar_genome_v1_262scaffolds_fasta.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 1.6 GB - MD5: 084a69b6ff9f9d9e57ec0d58c1ccd6b7 This is the unmasked version of the filtered genome (262 scaffolds) used in some steps of the annotation (see article for details).
01b_ccar_genome_v1_262scaffolds_sm_fasta.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 1.6 GB - MD5: 3055c321971811144243b5d91b3998dd Datagenome This is the soft-masked version of the genome used in some steps of the annotation pipeline (see article for details). The genome was soft-masked using Repeatmodeler.
02a_ccar_genome_v1_262scaffolds_trna_gff3.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 2.6 MB - MD5: e1ff55cd7f6075ef495e208664c34d5c This file contains the transfer RNAs (tRNAs) predicted by the tool tRNAScan-SE.
02b_ccar_genome_v1_262scaffolds_rrna_gff3.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 1.6 MB - MD5: 47ca43fd1ed2cf989f2bbfa340f19723 This file contains annotations of ribosomal RNAs predicted by RNAammer.
02c_ccar_isoseq_hq_transcripts_fasta.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 646.7 MB - MD5: ffedfa19d89406f2305beae31e83a54b
02d_ccar_annotation_v5_gff3.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 212.8 MB - MD5: 54423b6fc680239a4171338b33a6f4f1
03a_ccar_annotation_v5_proteins_fasta.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 55.7 MB - MD5: 2685ca29c2c6ab6e4843b20eec9ffe59 This is the predicted amino acid sequences from the genome (262 scaffolds) in fasta format. The sequences were extracted using the AGAT script "agat_sp_extract_sequences.pl" in Anaconda3 (2022.10 on Saga).
03b_ccar_annotation_v5_transcripts_fasta.txt Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius Plain Text - 228.7 MB - MD5: e3981b08eeb941b6770b6d8e592b8612 This is the predicted transcript sequences from the genome (262 scaffolds) in fasta format. The sequences were extracted using the AGAT script "agat_sp_extract_sequences.pl" in Anaconda3 (2022.10 on Saga).

04c_ccar_annotation_v5_swissprot_wGO_outfmt6.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 5.3 MB -

This is the blast output.

04d_ccar_annotation_v5_swissprot_hits_and_GO_v2.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 22.6 MB -

This file contains protein products for hits in the Uniprot Swissprot database (release 2024_06, 27-Nov-2024), including Uniprot entry and symbol, product name, and gene ontology (GO) terms where these are available.

01a_ccar_genome_v1_262scaffolds_fasta.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 1.6 GB -

This is the unmasked version of the filtered genome (262 scaffolds) used in some steps of the annotation (see article for details).

01b_ccar_genome_v1_262scaffolds_sm_fasta.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 1.6 GB -

Datagenome

This is the soft-masked version of the genome used in some steps of the annotation pipeline (see article for details). The genome was soft-masked using Repeatmodeler.

02a_ccar_genome_v1_262scaffolds_trna_gff3.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 2.6 MB -

This file contains the transfer RNAs (tRNAs) predicted by the tool tRNAScan-SE.

02b_ccar_genome_v1_262scaffolds_rrna_gff3.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 1.6 MB -

This file contains annotations of ribosomal RNAs predicted by RNAammer.

02c_ccar_isoseq_hq_transcripts_fasta.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 646.7 MB -

02d_ccar_annotation_v5_gff3.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 212.8 MB -

03a_ccar_annotation_v5_proteins_fasta.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 55.7 MB -

This is the predicted amino acid sequences from the genome (262 scaffolds) in fasta format. The sequences were extracted using the AGAT script "agat_sp_extract_sequences.pl" in Anaconda3 (2022.10 on Saga).

03b_ccar_annotation_v5_transcripts_fasta.txt

Feb 10, 2025 - Replication Data for: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius

Plain Text - 228.7 MB -

This is the predicted transcript sequences from the genome (262 scaffolds) in fasta format. The sequences were extracted using the AGAT script "agat_sp_extract_sequences.pl" in Anaconda3 (2022.10 on Saga).

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