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Apr 7, 2026
Pettersen, Jakob Peder, 2026, "Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq", https://doi.org/10.18710/EGMHAC, DataverseNO, V1
In the paper Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq , two secondary analysis bioinformatic pipelines for data from the PETRI-seq protocol (Blattman et al. 2020) are compared and benchmarked. One of these pipelines is the original PETRI-seq pipeline (Blattman et al. 2020 and Blattman et al. 2024, available a...
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Documentation
README file generated by DataverseUrge. This README documents the purpose and structure of the repository.
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Figure used in the paper Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq, produced by running numeric_comparison.R
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Config file which Petrisnake used for the benchmarking
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R script to produce the figure numeric_comparison.R from the data in the repository
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