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Replication Data for: Gene expression changes in ducklings exposed in ovo to emerging per-/poly-fluoroalkyl substances PFDoDS and PFECHS
May 28, 2025
Brand, Anne-Fleur, 2025, "Replication Data for: Gene expression changes in ducklings exposed in ovo to emerging per-/poly-fluoroalkyl substances PFDoDS and PFECHS", https://doi.org/10.18710/CZLZ0O, DataverseNO, V1
This dataset contains the data required to reproduce the analysis and the figures in the paper: Gene expression changes in ducklings exposed in ovo to emerging per-/poly-fluoroalkyl substances PFDoDS and PFECHS. This study investigated the effects of two emerging PFAS compounds,...
00_README.txt
May 28, 2025 - Replication Data for: Gene expression changes in ducklings exposed in ovo to emerging per-/poly-fluoroalkyl substances PFDoDS and PFECHS
Plain Text - 29.0 KB - MD5: c9c1e71b53dd6652af242c698d504d4d
01_Coding_mRNA_Sequencing_Data_Analysis.txt
May 28, 2025 - Replication Data for: Gene expression changes in ducklings exposed in ovo to emerging per-/poly-fluoroalkyl substances PFDoDS and PFECHS
Plain Text - 17.5 KB - MD5: 0a39e4356979b34d5bbbaa36e7d07da4
02_Count_DataFrame.csv
May 28, 2025 - Replication Data for: Gene expression changes in ducklings exposed in ovo to emerging per-/poly-fluoroalkyl substances PFDoDS and PFECHS
Comma Separated Values - 2.3 MB - MD5: ee52a61032efdf23d58efb2776f728e6
This file contains the gene expression counts derived from featureCounts outputs.
03_Coding_microRNA_Sequencing_Data_Analysis.txt
May 28, 2025 - Replication Data for: Gene expression changes in ducklings exposed in ovo to emerging per-/poly-fluoroalkyl substances PFDoDS and PFECHS
Plain Text - 21.2 KB - MD5: 0280b0b5630e47084ebabef7bd0e6b38
04_apl_hairpin.fasta
May 28, 2025 - Replication Data for: Gene expression changes in ducklings exposed in ovo to emerging per-/poly-fluoroalkyl substances PFDoDS and PFECHS
Unknown - 14.0 KB - MD5: a5d62e59c07165953cb5711af8bc1264
FASTA file containing mature microRNA sequences (pre-miRNAs) identified from the mallard (Anas platyrhynchos) genome. These sequences were discovered using MiRDeep2.
05_apl_mature.fasta
May 28, 2025 - Replication Data for: Gene expression changes in ducklings exposed in ovo to emerging per-/poly-fluoroalkyl substances PFDoDS and PFECHS
Unknown - 13.6 KB - MD5: 6ed687b801c0403f17f5940b5a95bc05
FASTA file containing hairpin microRNA sequences (pre-miRNAs) identified from the mallard (Anas platyrhynchos) genome. These sequences were discovered using MiRDeep2.
06_miRNAs_expression_weighed.csv
May 28, 2025 - Replication Data for: Gene expression changes in ducklings exposed in ovo to emerging per-/poly-fluoroalkyl substances PFDoDS and PFECHS
Comma Separated Values - 134.9 KB - MD5: cadc23e9bf0983262a2021de9bcfdc2f
The output CSV file generated by miRDeep2 quantifier. The file contains the microRNA expression data for each sample.
07_Coding_qPCR_Data_Analysis.txt
May 28, 2025 - Replication Data for: Gene expression changes in ducklings exposed in ovo to emerging per-/poly-fluoroalkyl substances PFDoDS and PFECHS
Plain Text - 15.5 KB - MD5: d2bcb10a519c50244efc36bd14a51345
08_Heart mRNA primer efficiency.csv
May 28, 2025 - Replication Data for: Gene expression changes in ducklings exposed in ovo to emerging per-/poly-fluoroalkyl substances PFDoDS and PFECHS
Comma Separated Values - 156 B - MD5: c8ca1adcb6be2b0662c86b736dc362e6
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