UiT The Arctic University of Norway

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featureCounts_L1.log Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Plain Text - 3.9 KB - MD5: ac2724011a276b1defe8e36859a52b75
numeric_comparison.R Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq R Syntax - 3.7 KB - MD5: c2a3edd4913fd218b44a3e6c3a7e1057 R script to produce the figure numeric_comparison.R from the data in the repository
pipeline_comparison_figures.Rproj Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Unknown - 205 B - MD5: c7331378404856f9d850f3cd356e0ac3 RStudio project file with predefined settings for code style
QF_L1.log Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Plain Text - 4.4 KB - MD5: 7fa0ac5de56122b71318cf6756b1aa39
QF.log Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Plain Text - 925 B - MD5: 81332f4a339e0f758d5008ee4e02edad
renv.lock Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Unknown - 356.7 KB - MD5: 7f2051f46b158ca6ba8494346c6315bf renv enviroment file used to reproduce the R environmentment to run numeric_comparision
run_benchmark.log Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Plain Text - 85.0 KB - MD5: 5d1711a1ba4bb50fefcd76fc0e317eff Log file showing the elapsed time in benchmarking
run_benchmark.sh Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Shell Script - 709 B - MD5: e2f30e4261d34813edc30f85bdb3915d Shell script for running the benchmark of the original PETRI-seq pipeline
select_reads.log Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Plain Text - 17.0 KB - MD5: 9017ffe6c4e319967e5dc7360fe3081d
seq Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq Unknown - 1 B - MD5: c81e728d9d4c2f636f067f89cc14862c

featureCounts_L1.log

Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq

Plain Text - 3.9 KB -

numeric_comparison.R

Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq

R Syntax - 3.7 KB -

R script to produce the figure numeric_comparison.R from the data in the repository

pipeline_comparison_figures.Rproj

Apr 7, 2026 - Replication Data for: Petrisnake, an improved computational pipeline for bacterial single-cell RNA-seq

Unknown - 205 B -

RStudio project file with predefined settings for code style

QF_L1.log